Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20836
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    33   0.22 
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...    31   1.2  
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157...    31   1.2  
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179...    28   6.4  

>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +1

Query: 79  KLCVKHFSAYVPWGGKENAVQNIEVC---CALPISCRIRHEGFKYVTHVILKTTKL*TNS 249
           K+C + F+ +    G++   +  E+C   C L   C++     +Y   V ++ T L TNS
Sbjct: 45  KICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALSTNS 104

Query: 250 NDITRIVHTNKDKIAVYATRLNAHAGL 330
           ND       N++  A    R  A AG+
Sbjct: 105 NDAIPRSDVNREYFAEEHDR-RARAGI 130


>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +1

Query: 79  KLCVKHFSAYVPWGGKENAVQNIEVC---CALPISCRIRHEGFKYVTHVILKTTKL*TNS 249
           K+C + F+ +    G++   +  E+C   C L   C++     +Y   V ++ T L  NS
Sbjct: 45  KICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINS 104

Query: 250 NDITRIVHTNKDKIAVYATRLNAHAGL 330
           ND       N++  A    R  A AG+
Sbjct: 105 NDAIPRSDVNREYFAEEHDR-KARAGI 130


>01_01_0185 -
           1570942-1571178,1571525-1571656,1571737-1571816,
           1571919-1572048,1572136-1572268,1572376-1572497,
           1572612-1572749,1572898-1572918,1573493-1573678,
           1574576-1574713,1575068-1575532
          Length = 593

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 10  YEGHDGSPL--WVIRSQFQGDLIPGKLCVKHF 99
           Y G +  P+  WVI    QGDL+ G  C  HF
Sbjct: 301 YLGQEKLPIIVWVIAQASQGDLVTGMFCWAHF 332


>08_01_0224 +
           1789447-1789633,1789959-1790261,1793380-1793542,
           1793561-1793597,1794305-1794925
          Length = 436

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 177 PNSARGI*VRDTCHFE-NYKVIDEFKRHNSYCTYK*R*DCRVRDPLERTRRPVALSLEPC 353
           PN A G    D  +FE N K+ D+      +C        R  + +  T++P+ LSLE C
Sbjct: 239 PNRALG--ATDKMYFEFNLKIRDDGDVDKDFCK-----GVREHNAICYTKQPMTLSLESC 291

Query: 354 VSWLSY 371
           +S + +
Sbjct: 292 LSTIDF 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,120
Number of Sequences: 37544
Number of extensions: 365835
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)