Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20836
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)                   33   0.30 
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               28   6.5  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)              28   8.6  

>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
          Length = 271

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 76  GKLCVKHFSAYVPWGGKENAVQNIEVCCALPISCRI-RHEGFKYVTHVILKTTKL*TNSN 252
           GK   K    ++    K N V + + C    +  RI +H G   +     +TT     S+
Sbjct: 16  GKAIEKRSEVFISMASKHN-VHSFKACKTTKMPLRIEKHSGRSRIEFPAERTTDRFAASS 74

Query: 253 DITRIVHTNKDKIAV 297
           DIT   HT K  +AV
Sbjct: 75  DITMASHTRKVMVAV 89


>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 91  KHFSAYVPWGGKENAVQNIEVCCAL-PISCRIRHEGFKYV-THVILKTTKL*TNSNDITR 264
           +H   Y+P G +E  V N+E      P SC + HEG + + +H       +   S+D T 
Sbjct: 366 QHSQQYLPKGTEETVVVNVEHHAVFPPESCVVNHEGNRSMDSHETDHDQSVNNESDDTTV 425

Query: 265 IVHTNKD 285
             + N D
Sbjct: 426 DFNVNGD 432


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 169  LAGHSTPQCFERHFLFLPTEHMQRNVSRI 83
            +AG +  Q F+   L+LPT H  +++SRI
Sbjct: 1366 VAGANVLQSFKEVLLYLPTVHFMKHLSRI 1394


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 RGEEKKMPFKTLRCAVPCQSRAEFGTRD 196
           RG+  K   KT +CA+ C+ +  +G+ D
Sbjct: 357 RGDSCKQECKTAKCALTCKGKGTYGSCD 384


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 547  INSTVRLSIHYHTHRETCKIR*LKIHEHT 461
            +  TVRL +H HTH  T ++    +H HT
Sbjct: 1604 VRVTVRL-VHNHTHSGTVRVTVRLVHNHT 1631


>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
          Length = 476

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 181 IRHEGFKYVTHVILKTTKL*TNSNDITRIVHTNKD 285
           +RH G   VTH + + T+L   S  ++R V  +KD
Sbjct: 440 LRHSGSNTVTHCVTRVTQL---SRTVSRTVQVHKD 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,801,061
Number of Sequences: 59808
Number of extensions: 458170
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)