Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20836
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 80  SYA*NISLHMFRGEEKKMPFKTLRCA 157
           +YA N SLH  R     +    L CA
Sbjct: 29  TYALNQSLHFVRASLSNLDMSVLECA 54


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 80  SYA*NISLHMFRGEEKKMPFKTLRCA 157
           +YA N SLH  R     +    L CA
Sbjct: 119 TYALNQSLHFVRASLSNLDMSVLECA 144


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 339 IVLQACVCVQAGRVHGNLIF 280
           +V+ AC  V +G  HGN I+
Sbjct: 531 LVVYACNVVGSGLSHGNWIY 550


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 246 FKRHNSYCTYK*R*DCRVRDPLERTR 323
           +K  NSY  Y+     R RD +ER R
Sbjct: 283 YKNENSYRKYRETSKERSRDRIERER 308


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 30   SPLGDQVSVPRRSNPRQVMRETFLCICSV 116
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1830 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1858


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 30   SPLGDQVSVPRRSNPRQVMRETFLCICSV 116
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1826 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,274
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)