Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20836
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29970.1 68416.m03797 germination protein-related similar to ...    31   0.75 
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    29   3.0  
At3g14370.1 68416.m01818 protein kinase family protein contains ...    27   9.3  
At1g53700.1 68414.m06110 protein kinase, putative similar to cuc...    27   9.3  

>At3g29970.1 68416.m03797 germination protein-related similar to
           HvB12D [Hordeum vulgare subsp. vulgare]
           gi|471319|emb|CAA54065
          Length = 87

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 245 FVYNFVVFKMTCVTYLNPSCRIRHE 171
           FV + VVF++T   +LNP CRI  E
Sbjct: 18  FVTSMVVFQLTRNAFLNPDCRINKE 42


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 613 LRSTFYNTFLSLFFLIIYLKRQINSTVRLSIHYH 512
           L + FY T LS F ++IYLK  +N    +S  Y+
Sbjct: 320 LVNDFYLTHLSFFDILIYLKINVNDCRAVSFCYY 353


>At3g14370.1 68416.m01818 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 480

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 124 FLPTEHMQRNVSRITCLGLDLLGTET*SPKGDYHRDLHNQP 2
           FLPT + + + S  TCL +D       +P GD H  L  QP
Sbjct: 147 FLPTLYARIDESHYTCLLIDY------APNGDLHSLLRKQP 181


>At1g53700.1 68414.m06110 protein kinase, putative similar to
           cucumber protein kinase CsPK3 [Cucumis sativus]
           gi|7416109|dbj|BAA93704
          Length = 476

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 124 FLPTEHMQRNVSRITCLGLDLLGTET*SPKGDYHRDLHNQP 2
           FLPT + + + S  TCL +D        P GD H  L  QP
Sbjct: 153 FLPTLYARIDASHYTCLLIDY------CPNGDLHSLLRKQP 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,688
Number of Sequences: 28952
Number of extensions: 299088
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)