Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20835
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 29 0.41
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 29 0.55
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.2
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 27 2.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 5.1
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 26 5.1
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 25 6.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.9
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 25 8.9
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 29.5 bits (63), Expect = 0.41
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 358 NMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVVECRPSRNSY 525
N +E+VG HP SY+Y + +F +++ P+ ++D S V S++SY
Sbjct: 207 NNNEFVGRTYIHP-SYNYGQFEQFCNSVEVSPAYNRMVDLRLSLNTVFQPLSQHSY 261
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 249 LPGPGANCVIRCRTNLAAQSATMLASSRIIRRIVRDYFHTLAVTISYYG 103
LP +N V+ C + +++ + +S+ ++ V DYF+T YYG
Sbjct: 192 LPLLDSNAVVECFNSYQSEADPVSNASKALKH-VNDYFNTSYAPAEYYG 239
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 412 YMWNEFFKHIDIEPSNAHVLDGNASDLVVECR 507
+ +N+ K+ D+ +AHV+ A+DLV R
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLVTASR 1046
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 380 RPTYS-SMLKVVTYLKDNFPSLWNSINRLYMPRGVPPV 270
R YS S++++ LK ++ L + + + PRG PPV
Sbjct: 410 RSLYSPSLMQMQQSLKSDYEGLGRTFDPRFAPRGSPPV 447
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 183 MLASSRIIRRIVRDYFHT-LAVTISYY 106
++A RI RRI +DY H L+ I Y+
Sbjct: 165 IIAGERIARRIRQDYLHAILSQNIGYF 191
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 187 CRLGRQIRPAADHAVRSGS 243
CRLGR++ AA AVR G+
Sbjct: 132 CRLGREVLDAAAAAVRPGT 150
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 290 PRGVPPVGRPSTSVFPDPERT 228
P G+PP+ S PDP RT
Sbjct: 223 PYGIPPIALTSAGGNPDPLRT 243
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 290 PRGVPPVGRPSTSVFPDPE 234
P G+PPV +PS + P P+
Sbjct: 1088 PSGIPPVPKPSVAAPPVPK 1106
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 6.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 355 FNMDEYVGLPRDHPESY 405
++ + + LPRDHPE Y
Sbjct: 82 YDTERKISLPRDHPEYY 98
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.0 bits (52), Expect = 8.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 318 QGREIIFQICDHFQHGRVC 374
+ R+++F +C H + RVC
Sbjct: 83 KSRKLLFSLCGHMDYVRVC 101
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 355 FNMDEYVGLPRDHPESYHYY--MWNEFFKHIDIEPSN-AHVLDGNASD 489
F + +VG+ P S HY+ N++F ++D ++ AH AS+
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPHCTHFAHTTTQPASE 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,740
Number of Sequences: 5004
Number of extensions: 53646
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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