Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20835
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261...    29   3.0  
04_03_0296 - 14041699-14041851,14042623-14042736,14044055-140442...    29   3.0  
04_03_0030 + 9747022-9747329,9747415-9747463,9747566-9747617,975...    29   3.0  
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923...    27   9.2  
08_01_0105 + 756998-757225,757311-758597                               27   9.2  

>09_06_0039 -
           20423829-20424308,20424664-20424729,20425969-20426104,
           20426222-20426415
          Length = 291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 558 GIGPDGHIAFNEPGSSLVSRTR 623
           G+GPDGHIA   PG  LV+  +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK 207


>04_03_0296 -
           14041699-14041851,14042623-14042736,14044055-14044209,
           14049337-14049388,14049491-14049539,14049622-14049929
          Length = 276

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 329 FPSLWNSINRLYMPRGVPPVGRPSTSVFPDPERTA*SAAGRIWRPSR 189
           F SL +S +RL +PR + P G   + V    +  A   AG   R SR
Sbjct: 27  FSSLASSSHRLSLPRALRPAGPLPSDVEDSDDSNAGDGAGEALRKSR 73


>04_03_0030 +
           9747022-9747329,9747415-9747463,9747566-9747617,
           9752742-9752896,9754217-9754330,9755104-9755256
          Length = 276

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 329 FPSLWNSINRLYMPRGVPPVGRPSTSVFPDPERTA*SAAGRIWRPSR 189
           F SL +S +RL +PR + P G   + V    +  A   AG   R SR
Sbjct: 27  FSSLASSSHRLSLPRALRPAGPLPSDVEDSDDSNAGDGAGEALRKSR 73


>08_02_1479 +
           27390852-27391059,27392017-27392138,27392227-27392350,
           27392641-27392702,27392778-27392859,27393338-27393410,
           27397092-27397227,27397337-27397386,27397542-27397590,
           27398352-27398831
          Length = 461

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 546 LFIGGIGPDGHIAFNEPGSSLVS 614
           L + G+GPDGH+A   PG  +V+
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVN 374


>08_01_0105 + 756998-757225,757311-758597
          Length = 504

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 545 MHSASLLYEFLEGRHSTTKSDALPSSTCALLGSMS 441
           +H+A+ +++F + RH  + SD+L SS C    S S
Sbjct: 208 LHAATQVFDFAD-RHRGSYSDSLASSVCPFYCSYS 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,784
Number of Sequences: 37544
Number of extensions: 405490
Number of successful extensions: 1233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)