Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20835
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   4e-32
SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)          47   1e-05
SB_12333| Best HMM Match : Acyl_transf_3 (HMM E-Value=6)               29   3.1  
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   5.4  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score =  134 bits (325), Expect = 4e-32
 Identities = 56/71 (78%), Positives = 64/71 (90%)
 Frame = +1

Query: 292 MYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVL 471
           MY++LIEF+K G+LSFKYV TFNMDEYVGLP+DHPESYH YMW+ FFKHIDI P NAH+L
Sbjct: 51  MYRKLIEFYKRGELSFKYVKTFNMDEYVGLPKDHPESYHSYMWDNFFKHIDILPENAHIL 110

Query: 472 DGNASDLVVEC 504
           DGNA+DLV EC
Sbjct: 111 DGNAADLVQEC 121



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = +3

Query: 510 FEKLIQEAGGVHLFIGGIGPDGHIAFNEPGSSLVSRTR 623
           FE+ I+ AGGV +F+GGIGPDGHIAFNEPGSSL SRTR
Sbjct: 124 FEEKIKAAGGVDVFVGGIGPDGHIAFNEPGSSLASRTR 161



 Score = 35.1 bits (77), Expect = 0.047
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 152 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHSCWACP 271
           MRL+I   +  V++WAA++V  RI Q  PGP  +     P
Sbjct: 1   MRLVIQNTSVEVSEWAAKYVRNRILQKNPGPDNYFVLGLP 40


>SB_16349| Best HMM Match : Glucosamine_iso (HMM E-Value=0.14)
          Length = 62

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +3

Query: 561 IGPDGHIAFNEPGSSLVSRTR 623
           IGPDGHIAFNEPGSSL SRTR
Sbjct: 2   IGPDGHIAFNEPGSSLASRTR 22


>SB_12333| Best HMM Match : Acyl_transf_3 (HMM E-Value=6)
          Length = 303

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 10  IAKLFSFFIIQRKVILSSSLLFFK-KWNSFVLSVIRYC 120
           I K  SF+  Q   ILSSSL++F  KW+S V  +++ C
Sbjct: 156 IGKPCSFYR-QALFILSSSLVYFMVKWSSLVYFIVKPC 192


>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 276 WDAPRHVQTVDRVPQGREIIFQICDHFQHGRVC 374
           W AP  VQ   R   G +    +CDH    RVC
Sbjct: 669 WKAPLDVQIKARCVVGDDYPEPVCDHLLQRRVC 701


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = -2

Query: 291 AEGRPTGGQAQHECLPGPGANCVIRCRTNLAAQSATMLASSRIIRRIVRD---YFHTLAV 121
           ++G PT   A+H+  P P  +     +++LA +       SR    ++ D   Y  + ++
Sbjct: 84  SDGTPTESNAKHKDTPRPKEDWYKETQSSLAEELDDTRQRSRSTEDLLSDSRRYGSSSSI 143

Query: 120 TISYYGQYERIPLLEK 73
           + S Y    R PL E+
Sbjct: 144 SSSTYSSPYRSPLSER 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,735
Number of Sequences: 59808
Number of extensions: 436539
Number of successful extensions: 1218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)