Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20835
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...   108   3e-24
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score =  108 bits (260), Expect = 3e-24
 Identities = 46/71 (64%), Positives = 56/71 (78%)
 Frame = +1

Query: 292 MYKRLIEFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVL 471
           MYK+LIEF+  G +SF+ V TFNMDEYV LPRDH ESYH +M++ FF+HIDI P+N H+L
Sbjct: 47  MYKKLIEFYNAGVISFEKVKTFNMDEYVDLPRDHTESYHSFMFDNFFRHIDINPANIHIL 106

Query: 472 DGNASDLVVEC 504
           DGN SD   EC
Sbjct: 107 DGNTSDHEKEC 117



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +3

Query: 510 FEKLIQEAGGVHLFIGGIGPDGHIAFNEPGSSLVSRTR 623
           +E+ I+E+GG+ LF+GGIGPDGHIAFNEPGSSL SRTR
Sbjct: 120 YERKIKESGGIDLFVGGIGPDGHIAFNEPGSSLASRTR 157



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 152 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHSCWACPPVGRP 286
           M+LII E+A  VA++AAR+V+ +I + A   G++     P    P
Sbjct: 1   MKLIIEENADKVAEFAARYVVTKINE-ATENGKYLVLGLPTGSTP 44


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 383 GRPTYSSMLKVVTYLKDNFPSLWNSINRLYMPRGV 279
           G+  Y  MLK    ++D  PSLWN I      RG+
Sbjct: 270 GKEYYWKMLKRNRIMRDIKPSLWNQITATGDIRGI 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,623
Number of Sequences: 27780
Number of extensions: 322222
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)