Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20835
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    29   0.049
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    29   0.049
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    27   0.15 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    27   0.15 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    27   0.15 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    26   0.26 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    26   0.26 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.26 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   3.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   3.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.8  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 330 FPFLVELYQPFVHAEG----RPTGGQAQHECLPGPGAN 229
           +P +V +Y P+   +G    +   G   H CLP P  N
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRIN 54


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 330 FPFLVELYQPFVHAEG----RPTGGQAQHECLPGPGAN 229
           +P +V +Y P+   +G    +   G   H CLP P  N
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNGHCSHLCLPAPRIN 54


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMP 288
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMP 288
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMP 288
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMPRG 282
           KVV +L DN P +W  +   Y P G
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYDPTG 112


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMPRG 282
           KVV +L DN P +W  +   Y P G
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYDPTG 112


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 397 ESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVVE-CRPSRNS 522
           ES   Y W     HID +P +    +  A  +V+E C+ + N+
Sbjct: 183 ESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNN 225


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 221 ITQFAPGPGRHSCWACPPVGRPS 289
           I +F    G HSC ACP   + S
Sbjct: 267 IGKFKHEAGSHSCEACPAHSKSS 289


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMPRG 282
           KVV YLK   P  W  ++  Y   G
Sbjct: 85  KVVNYLKTKRPKDWERLSAKYDSTG 109


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 569 RTDTSDEQMHSASLLYEFLEGRHSTTKSDALPSS 468
           RT       H   ++YE L GRH     + L SS
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSS 65


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 569 RTDTSDEQMHSASLLYEFLEGRHSTTKSDALPSS 468
           RT       H   ++YE L GRH     + L SS
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSS 65


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 356 KVVTYLKDNFPSLWNSINRLYMPRG 282
           KVV YLK   P  W  ++  Y   G
Sbjct: 85  KVVNYLKTKRPKDWERLSAKYDSTG 109


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 120 SPLTCESNPELCVL 161
           SP  CE NP+L +L
Sbjct: 83  SPPFCEKNPKLGIL 96


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 120 SPLTCESNPELCVL 161
           SP  CE NP+L +L
Sbjct: 84  SPPFCEKNPKLGIL 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,751
Number of Sequences: 438
Number of extensions: 3857
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)