Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20835
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40150.1 68418.m04872 peroxidase, putative identical to perox...    29   2.5  
At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim...    29   2.5  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    29   2.5  
At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate i...    28   4.4  
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    28   4.4  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    28   4.4  
At2g42860.1 68415.m05307 expressed protein                             28   5.8  
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident...    28   5.8  

>At5g40150.1 68418.m04872 peroxidase, putative identical to
           peroxidase ATP26a {Arabidopsis thaliana}
           GP|1890317|emb|CAA72487
          Length = 328

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = -2

Query: 249 LPGPGANCVIRCRTNLAAQSATMLASSRIIRRIVRDYFHTLAVTISYYGQYERIPLLEKQ 70
           LPG G + VIR +T L       ++ S II   VRD    L VT+   G Y  I L  + 
Sbjct: 103 LPGDGFDVVIRAKTALELACPNTVSCSDIIAVAVRD----LLVTVG--GPYYEISLGRRD 156

Query: 69  KTTA 58
             T+
Sbjct: 157 SRTS 160


>At5g13380.1 68418.m01541 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 624

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 383 GRPTYSSMLKVVTYLKDNFPSLWNSI 306
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 246 GAPYASSFLKVIKFLEDHWPELCSNI 271


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 383 GRPTYSSMLKVVTYLKDNFPSLWNSI 306
           G P  SS LKV+ +L+D++P L ++I
Sbjct: 216 GAPFASSFLKVIKFLEDHWPELCSNI 241


>At5g24400.1 68418.m02876 glucosamine/galactosamine-6-phosphate
           isomerase family protein low similarity to SP|O95336
           6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
           sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase
          Length = 325

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 546 LFIGGIGPDGHIAFNEPGSSLVSRTR 623
           L + G+GPDGH+A   PG  L + ++
Sbjct: 223 LMLLGMGPDGHVASLFPGHGLCNESK 248


>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 199 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 113
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 199 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 113
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At2g42860.1 68415.m05307 expressed protein
          Length = 224

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 587 ERDVTVRTDTSDEQMHSASLLYEFLEGRHSTTKSD 483
           + D +  T+ ++E  HS +   E LEG  S++ SD
Sbjct: 110 QEDTSAETEQTNEMFHSLNDSNEILEGTKSSSASD 144


>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
           identical to ania-6a type cyclin [Arabidopsis thaliana]
           GI:13924511
          Length = 416

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 289 RGASHRWAGPARVSSRTRSELRDPLQDESGGPVGNDAGIFENYKTHSS 146
           RG SHR     R S R R +L+D     S   + +  G  +  + HSS
Sbjct: 353 RGRSHRGRDSDRDSDRERDKLKDRSHHRSRDRLKDSGGHSDKSRHHSS 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,603
Number of Sequences: 28952
Number of extensions: 298424
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)