Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20834
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 37 0.003
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 33 0.054
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 32 0.071
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 32 0.094
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 31 0.12
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 29 0.50
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 26 4.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 6.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 6.1
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 6.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 6.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 8.1
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 226 YVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQ 336
Y ++ PP Y NY PPQ + YPQ YAPPQ
Sbjct: 7 YGDKGYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +1
Query: 253 PPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
PP YPQ YAPPQ YPQ Y Q Y
Sbjct: 28 PPQQNYPQQGYAPPQG--YPQGGYPAQQPMY 56
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 32.7 bits (71), Expect = 0.054
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 166 CIQLVRTFEPEPAYPVETSKYVER-STQADPPINTYPQNNYAPPQNSYYPQN 318
CIQ +RTF+ + PV T + S PI+ P+ + +PP S + +N
Sbjct: 110 CIQQLRTFQQQGYIPVITWPNTDSPSATTSSPISRNPEYSVSPPNGSKFVKN 161
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 32.3 bits (70), Expect = 0.071
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
P P P S V S D N Y + PP +PQ +Y P ++
Sbjct: 309 PSPCCPSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTSF 359
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 31.9 bits (69), Expect = 0.094
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYPQN-NYAPPQNSYYP-QNTYAPP 333
P PA ++ + Q PP YPQ Y P Q +YYP Q YA P
Sbjct: 84 PAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 397 VPVIKNEMYYGDNSSYKYEYQIADGTHVGEEGYFTNPIQ 513
VP+ + YG ++SY YE I + T+ + Y +PIQ
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQ 310
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 172 QLVRTFEPEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNT 321
+L+RT+ P YP E +K + S +AD +N N P S +NT
Sbjct: 159 ELIRTYFPND-YPKEANKDIPSSAEADTMLNLESSENREQP-TSLKEENT 206
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +1
Query: 253 PPINTYPQNNYAPPQNSYYPQNT---YAPPQ 336
PP NTY + NY+ P N NT Y PP+
Sbjct: 14 PPYNTYTRPNYS-PNNGSQSNNTVHQYQPPR 43
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 584 VDGVNFAISSSV-RVPALFHQACLFCMGFVK 495
V G F + SS+ +PA++ + L+C+G VK
Sbjct: 352 VSGTFFGVVSSLFLLPAMWKRRSLYCVGIVK 382
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +2
Query: 203 PIQWKP--QNTWNAPPKPIR 256
P W P +N W++PPK IR
Sbjct: 117 PFSWIPDGKNVWDSPPKYIR 136
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 540 SPFSPGLPLLYGIREVAFL---AYVCSIGDLILVFVTAIITIIHF 415
+PF L + +E++ L ++ +IGD +F T I+T + F
Sbjct: 451 TPFLQKLLHIRNTKELSMLKKIGFITAIGDFAWIFTTIIVTTVAF 495
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 319 YSEDSMSFEGGRNCFGDKCLSADRLGWS 236
Y E S+S EGGR C LS D L S
Sbjct: 278 YDESSVSLEGGRYCETVGWLSIDGLAAS 305
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 259 INTYPQNNYAPPQNSYYPQNTYA 327
IN P+ + PP +SY+P+ +A
Sbjct: 60 INNDPKVRFLPPVDSYHPKRNHA 82
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = +1
Query: 196 EPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNS-----YYPQNTYAPPQNTY 345
E +P + +E S P PQ NY P +S Y Q Y P Q Y
Sbjct: 186 EGIFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPY 240
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 630 PTPPPVPAAIQAALDQNAKEEAAQLK 707
P PPP P A+ + D++A + +K
Sbjct: 319 PLPPPPPVAVNSTNDESAPQNEELVK 344
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 284 TPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLP 397
T KT+T+L+ P H++ A + I +LQQLP
Sbjct: 172 TDAYKTYTMLKYPAHIVAV------ASISIACKLQQLP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,705
Number of Sequences: 5004
Number of extensions: 60279
Number of successful extensions: 251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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