Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20834
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 35 0.057
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 33 0.17
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 32 0.53
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 31 0.93
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 31 1.2
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05) 29 4.9
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 4.9
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22) 28 6.5
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 28 8.6
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 28 8.6
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11) 28 8.6
SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9) 28 8.6
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 8.6
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 127 STKQKLRPQHGC*CIQLVRTFEPEPAYPVETSKYVERSTQADPPINTY--PQNNYAPPQN 300
ST+ +L G C+ + ++PE + Y PP +Y P +Y PP
Sbjct: 388 STRDQLSKVSGLGCV--IFLYDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHK 445
Query: 301 SYY-PQNTYAPPQNTYR 348
SY P +Y PP +Y+
Sbjct: 446 SYQPPHKSYQPPHKSYQ 462
Score = 34.3 bits (75), Expect = 0.100
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 348
P +Y Y PP +Y P +Y PP SY P +Y PP +Y+
Sbjct: 429 PHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQ 483
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 348
P +Y Y PP +Y P +Y PP SY P +Y PP +Y+
Sbjct: 422 PYKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQ 476
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 348
P +Y Y PP +Y P +Y PP SY P +Y PP +Y+
Sbjct: 443 PHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYKSYQ 497
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 205 YPVETSKYVERSTQADPPINTY--PQNNYAPPQNSY-YPQNTYAPP 333
YP+ T++Y + + P N Y P N Y P N Y P+N Y PP
Sbjct: 619 YPLPTNRYPLPTNRYPLPTNRYPLPTNRYPIPTNRYPLPKNRYPPP 664
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYP--QNNYAPPQNSYYPQNTYAPP 333
P YP+ T++Y + + P N YP N Y P+N Y P PP
Sbjct: 622 PTNRYPLPTNRYPLPTNRYPLPTNRYPIPTNRYPLPKNRYPPPYKQVPP 670
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 355 RWDDRCFEEVHRYSEDSMSFEGGRNCFGDKCLSADRLGWSVPRIL 221
RW+ + F+E +RY FE R KC ++GWS+ R++
Sbjct: 150 RWEWQYFDECYRYFRTQTCFENHRRV---KCSVCKKVGWSMDRLV 191
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 705 SAARLPLWHFDQG-LPE*QQVREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKSTSPFS 529
SA L LW D+ P V W + GS + P SGR + + +++SPF
Sbjct: 306 SAPTLCLWRNDKNNTPTNDGVYNFNWFSHNGPTGSANTGPPSGRGGSGYYIYLETSSPFQ 365
Query: 528 PGL 520
PG+
Sbjct: 366 PGM 368
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 196 EPAYPVETSKYVERSTQADPPINTYP--QNNYAPPQNSYYPQNTYAPP 333
+P+YP S Y+ PP YP Q +Y P +SY P PP
Sbjct: 513 QPSYPPTPSSYLPTQPYYPPP-QPYPPTQPSYPPTPSSYPPTQPSYPP 559
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 648 VREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQC--KSTSP 535
+ EE+W +K + C CK CH+++C K T P
Sbjct: 131 ILEEKWEKEKKKFKCKCCGRVDCTCKKCHKIECEQKETEP 170
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 184 TFEPEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
++ P+P YP + Y ++ PP YPQ Y PPQ Y P Y Q Y
Sbjct: 157 SYPPQP-YPAQP--YPQQGYPPQPPPQAYPQPGY-PPQ-GYPPTGPYPQTQPGY 205
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 615 YGDHLPTPPPVPAAIQAALDQNAKEEAAQLKPK 713
+ D TPPPVP ++ A +++ EEA +L K
Sbjct: 1016 FDDVSDTPPPVPHSLYAEIEKKQAEEAKRLAQK 1048
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +1
Query: 187 FEPEPAYPVETSKYVERSTQADPPINT--YPQNNYAPPQNSYYPQNTYAPPQN 339
+ P P P S +PP YP PP N+ YP Y PP N
Sbjct: 132 YPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAP 330
P P YP + + PP P Y PP N YP AP
Sbjct: 157 PPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAP 202
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +1
Query: 187 FEPEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQN 339
+ P P P + P P Y PP N YP Y PP N
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN 166
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 196 EPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAP 330
EP VE + VE ++ A+ P NT N P ++ P NT P
Sbjct: 78 EPTSTVEPTNTVEPTSTAE-PTNTVEPTNTVEPTSTVEPTNTVEP 121
>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
Length = 322
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 309 SSEYLCTSSKHLSSHLEHAFISDFDYNNSRPSDQ 410
S EY SKHLS L H +IS+ + S +D+
Sbjct: 71 SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 208 PVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 348
PV+ Y+ + PQ APP NSY + Y PP YR
Sbjct: 655 PVQMFDYLPPGQSGRSMRPSMPQYPQAPPYNSYQSRQQY-PPMPPYR 700
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
P P V E + P P ++ APP+ S P + APPQ T
Sbjct: 724 PPPPEEVSLPPPDESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQTT 773
>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
Length = 1043
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 235 RSTQADPPINTYPQNNYAPPQNSYYPQNT 321
R+ Q PP +P NY+PP + +NT
Sbjct: 235 RAPQETPPTFVHPSMNYSPPFQLMHDKNT 263
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 199 PAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPP 333
P +P + ++ + PP++ YP + PP +P PP
Sbjct: 996 PGHPFDQGPFLMEPGRFPPPVS-YPSGHRVPPPPRPFPMGAGQPP 1039
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 250 DPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
+PP+ P N PPQ Y P PP ++
Sbjct: 44 EPPVYAKPNNYQPPPQPGYRPPYPGYPPTSS 74
>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
Length = 900
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 621 PRKHGSQSCRPSSGRCKLCHQLQCKSTS 538
P + G+ S G C++C+ +QC S S
Sbjct: 396 PARGGADCVGSSRGHCRVCNSVQCPSGS 423
>SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9)
Length = 482
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 403 VIKNEMYYGDNSSYKYEYQIADGTHVGEEGYFTNPIQKRQAW*KRAGTLTLEL 561
V E YY +N +E A EE T P+ AW K GT +L L
Sbjct: 418 VYSPERYYNENEYGLFEMHGAVLIANSEEALRTKPVDAGWAWEKIPGTTSLGL 470
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1
Query: 199 PAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 348
P+YP +Y Q P YPQ P Q Y Q A PQ R
Sbjct: 963 PSYPSYPQQYP--MLQPYPQQQPYPQQQPYPQQRQYAGQQMVACPQQVLR 1010
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,733,091
Number of Sequences: 59808
Number of extensions: 494495
Number of successful extensions: 1961
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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