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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20834
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK172839-1|BAD18804.1|  473|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AJ295977-1|CAC14125.1|   80|Homo sapiens immunoglobulin heavy ch...    30   9.5  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    30   9.5  

>AK172839-1|BAD18804.1|  473|Homo sapiens protein ( Homo sapiens
           cDNA FLJ24000 fis, clone KAIA1329, highly similar to
           Homo sapiens cAMP responsive element binding protein
           3-like 3 ).
          Length = 473

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 651 QVREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKSTSPFSPGLP 517
           QV   +WV    +H  ++CR   G  + C   Q  +  P  PG+P
Sbjct: 392 QVAPLDWVAPGPEHWLRTCRAGGGGRRACEPRQDYAPRPLCPGVP 436


>AJ295977-1|CAC14125.1|   80|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 80

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 219 GFHWIGGLWFEGAYELYALAAVLRSKLLLSR 127
           G  W+  +W++G+Y+ Y  AA ++ +  +SR
Sbjct: 14  GLEWVAVIWYDGSYKYY--AASVKGRFTISR 42


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 215  KPQNTWNA-PPKPIRR*TLIPK-TITPPLKTHTILRIPMHLL--KTPIVPPGARLHIRLR 382
            +P N   A PPKP R   + P  T TP L    + + P  LL  + P  PP   + ++L 
Sbjct: 872  RPSNRAAALPPKPARPPAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLY 931

Query: 383  LQQL 394
            LQQL
Sbjct: 932  LQQL 935


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,323,044
Number of Sequences: 237096
Number of extensions: 2467243
Number of successful extensions: 9188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9137
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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