Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20834
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 36 0.038
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 35 0.050
Z68004-3|CAA91983.2| 380|Caenorhabditis elegans Hypothetical pr... 32 0.35
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 31 0.62
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 31 0.62
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 31 0.62
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 31 0.62
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical ... 30 1.4
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 30 1.4
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 30 1.9
Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81106-5|CAB03223.3| 432|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL033536-12|CAD45609.2| 432|Caenorhabditis elegans Hypothetical... 28 5.8
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 28 5.8
AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical ... 28 5.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69902-12|CAA93771.2| 525|Caenorhabditis elegans Hypothetical p... 28 7.6
AL033535-2|CAA22132.2| 525|Caenorhabditis elegans Hypothetical ... 28 7.6
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 7.6
AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (... 28 7.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 7.6
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 35.5 bits (78), Expect = 0.038
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +2
Query: 206 IQWKPQNTWNAPPKPIRR*TLIPKTITPPLKTHTILRIPMHLLKTPIVPPGARLHI---R 376
+ W P T N P PIR T P+T ++LL +P P +LH+
Sbjct: 447 VDWGPHRTKNVP--PIRSATETPETDHRQDDQSVASTSALYLLDSPGPDPSPKLHLTSEE 504
Query: 377 LRLQQLPSQ*SRMKCIMVIIAVTNTSIKSPME 472
L++L ++ SR+ C + + N S+ +PM+
Sbjct: 505 KELKKLKTKLSRI-CKLSLSFTANDSVSTPMQ 535
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 190 EPEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPP 333
+ +P P Y + Q P ++ P N++APP ++PQ+ PP
Sbjct: 45 QQQPNLPPPQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMPP 92
>Z68004-3|CAA91983.2| 380|Caenorhabditis elegans Hypothetical
protein F47B10.3 protein.
Length = 380
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 238 STQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
ST ++PPI TYP NN P N P Y P N Y
Sbjct: 306 STISNPPIVTYP-NNSVVPYNPVTPLYPYFPMPNMY 340
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 226 YVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
Y ++ST + PINT NY P ++ Y + PPQ +
Sbjct: 1139 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1177
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 226 YVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
Y ++ST + PINT NY P ++ Y + PPQ +
Sbjct: 1100 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1138
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 226 YVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
Y ++ST + PINT NY P ++ Y + PPQ +
Sbjct: 1136 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1174
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 226 YVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNT 342
Y ++ST + PINT NY P ++ Y + PPQ +
Sbjct: 1139 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1177
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 190 EPEPAYPVETSKYVERSTQADPPINTYPQNNYAP-PQNSYYPQNTYAPPQNTY 345
EPEP E + Q +P P+ + P P+ P N+YA P N+Y
Sbjct: 107 EPEPEPRPEPQPEPQPEPQPEPQPEPQPEPHPEPAPEPIVKPYNSYAQPHNSY 159
>Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical
protein F20D1.3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +1
Query: 184 TFEPEP-AYPVETSKYVERSTQADPPINTYPQNNYAPP--QNSYYPQNTYAPPQNTY 345
T+ P P AYP K ++P YP NNY Q P +Y P Q+ Y
Sbjct: 357 TYNPAPPAYPSLDEKSGNPPYPSNPSNQPYPSNNYGNQGGQGQAPPYPSYNPNQSNY 413
>AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical
protein Y4C6B.1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 234 TLHPSRSADKHLSPKQLRPPSKLILSSEYLCTSSKHLSSHLE 359
T+ PS+ A+K SPK L PP++ I+S+ T H S L+
Sbjct: 343 TVTPSKPAEKKSSPKSL-PPAETIVSNRPYLTDIAHGRSMLK 383
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 184 TFEPEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
+++ P+Y V + ++ A PP + + +Y+ P S Y N AP + Y
Sbjct: 339 SYDTTPSYSVPSYTAPKKYPVASPPSDYAQKPSYSAPSPSGYTSNFEAPTETNY 392
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 199 PAYPVETSKYVERSTQADPPINTYPQNNYAPP 294
P Y + YV RST A PP N PQN A P
Sbjct: 297 PVYSPPRTTYVPRSTSAAPP-NPPPQNPTAAP 327
>Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical
protein F02D8.2 protein.
Length = 285
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 253 PPINTYPQN--NYAPPQNSYYPQNTYAPPQNTY 345
PP N+Y NYA P N+Y Y+ P N+Y
Sbjct: 68 PPANSYATAPANYAAPSNAYPFAPQYSIPMNSY 100
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 193 PEPAYPVETSKYVERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
P+P Y + T P N YP + PP + P T PP +Y
Sbjct: 665 PDP-YVISNPIPTLSPTAGTPSFNIYPYPSLPPPTTTISPLPTLLPPNISY 714
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Frame = +1
Query: 271 PQNNYAPPQNSY-YPQNTYAP---PQNTY 345
PQ +Y+PP++SY P+ TY+P P ++Y
Sbjct: 87 PQPSYSPPKSSYGRPEPTYSPYSRPSSSY 115
>Z81106-5|CAB03223.3| 432|Caenorhabditis elegans Hypothetical
protein R06C1.6 protein.
Length = 432
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 TSKYVERSTQADPPINTYPQNNY----APPQNSYYPQNTYAPPQ 336
+S Y S ++ PP++ Y QNN +PP + Y + Y Q
Sbjct: 190 SSNYNPASQKSSPPLSKYSQNNQGQRNSPPNHGYPNMSPYMTSQ 233
>AL033536-12|CAD45609.2| 432|Caenorhabditis elegans Hypothetical
protein R06C1.6 protein.
Length = 432
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +1
Query: 217 TSKYVERSTQADPPINTYPQNNY----APPQNSYYPQNTYAPPQ 336
+S Y S ++ PP++ Y QNN +PP + Y + Y Q
Sbjct: 190 SSNYNPASQKSSPPLSKYSQNNQGQRNSPPNHGYPNMSPYMTSQ 233
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 406 SLGRELL*SKSDMKACSRWDDRCFEEVHRYSEDSMSF 296
++ RE L S MKA + + R F + +++EDS+SF
Sbjct: 803 TISREELASAMGMKANNEFVKRMFAMIAKHNEDSLSF 839
>AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical
protein Y51H7C.10 protein.
Length = 237
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 513 LYGIREVAFLAYVCSIGDLILVFVTAIITIIHFILDHW 400
+Y I V V I IL FV + T+I+F+ + W
Sbjct: 143 IYSIPRVPVYVAVTVIAACILTFVLLVGTVIYFLTNRW 180
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 606 SQSCRPSSGRCKLCHQ 559
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 606 SQSCRPSSGRCKLCHQ 559
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>Z69902-12|CAA93771.2| 525|Caenorhabditis elegans Hypothetical
protein VF13D12L.1 protein.
Length = 525
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 302 HTILRIPMHLLKTPIVPPG 358
H++L I LLK P+VPPG
Sbjct: 461 HSVLSILSLLLKAPVVPPG 479
>AL033535-2|CAA22132.2| 525|Caenorhabditis elegans Hypothetical
protein VF13D12L.1 protein.
Length = 525
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 302 HTILRIPMHLLKTPIVPPG 358
H++L I LLK P+VPPG
Sbjct: 461 HSVLSILSLLLKAPVVPPG 479
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 253 PPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 345
PP+++ P N+APP S P +APP + +
Sbjct: 369 PPVSSAP-GNFAPPPQS-GPPGAFAPPPSAF 397
>AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (grd
related) protein 1 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 205 YPVETSKYVERSTQADPPINTYPQNNYAP---PQNSYYPQNTYAPPQNTYR 348
Y ++ Y + Q P T Q +Y P PQ++ P Y P NTY+
Sbjct: 24 YMCGSANYYQAYAQQQPATATRYQASYIPQQMPQHTSQPMIQYYYPANTYQ 74
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 606 SQSCRPSSGRCKLCHQ 559
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 606 SQSCRPSSGRCKLCHQ 559
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,525
Number of Sequences: 27780
Number of extensions: 362199
Number of successful extensions: 1450
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -