Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20834
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    58   6e-11
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = +3

Query: 516 EASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVPAAIQAALDQNA 683
           E  +V +G  SYT  DG+  ++ Y AD+ G+   G H+PT PP+P  IQ AL+ NA
Sbjct: 66  ETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNA 121


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 422 IMVIIAVTNTSIKSPMEHT*AR 487
           ++V IAV N + +SP+ H  AR
Sbjct: 314 VVVTIAVLNVNFRSPVTHRMAR 335


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 409 KNEMYYGDNSSYKYEYQIADGTHVGEEGYFTN 504
           KNE   G  S+YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +1

Query: 232 ERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTYRXXXXXXXXXXXXXXXXVPVIK 411
           ER T  +P I +   NNY     + Y  N      N Y                 +PV  
Sbjct: 72  ERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV-P 130

Query: 412 NEMYYGD 432
             +YYG+
Sbjct: 131 VPVYYGN 137


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +1

Query: 232 ERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQNTYRXXXXXXXXXXXXXXXXVPVIK 411
           ER T  +P I +   NNY     + Y  N      N Y                 +PV  
Sbjct: 72  ERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV-P 130

Query: 412 NEMYYGD 432
             +YYG+
Sbjct: 131 VPVYYGN 137


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 397 VPVIKNEMYYGDNSSYKYEY 456
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 200  PPIQWKPQNTWNAPP 244
            P + + P N WN PP
Sbjct: 1154 PHLPFTPFNFWNPPP 1168



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +1

Query: 232  ERSTQADPPINTYPQNNYAPPQNSYYPQNTYAPPQ 336
            +++ Q  P      Q    P Q S  PQ     PQ
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQ 1532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,532
Number of Sequences: 438
Number of extensions: 5105
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)