Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20831
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0080 + 25420371-25420423,25420681-25420780,25421742-254218... 30 2.1
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265... 29 2.7
06_03_1259 - 28800954-28802468 29 2.7
05_06_0062 - 25276994-25277089,25277374-25277448,25281149-252812... 29 2.7
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 29 4.8
11_04_0403 + 17298498-17298713,17298799-17299696,17299874-173005... 28 6.3
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 28 6.3
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 28 6.3
04_04_1345 + 32792879-32794207 28 8.4
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525... 28 8.4
>05_06_0080 +
25420371-25420423,25420681-25420780,25421742-25421888,
25421959-25422039,25422147-25422296
Length = 176
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 237 R*FGSQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 416
R F Q+WD GQE F A +R + + V+DV S + +++ ++ E +
Sbjct: 46 RLFTLQIWDTAGQERFQSLGVA-----FYRGADCCVLVYDVNSMKSFDNLNNWRE--EFL 98
Query: 417 LQNSP 431
+Q SP
Sbjct: 99 IQASP 103
>07_03_0473 -
18525712-18525858,18526049-18526162,18526442-18526522,
18526787-18526865,18526902-18526996,18527092-18527170,
18527339-18527450,18527682-18527770,18527868-18527938,
18528846-18528962
Length = 327
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE 371
QLWD GQE F S + R+ V + VFDV SR+
Sbjct: 61 QLWDTAGQER-----FRSLIPSYIRDSSVAVIVFDVASRQ 95
>06_03_1259 - 28800954-28802468
Length = 504
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +1
Query: 97 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNYGIVVVR 276
K+ LL G G+GKTS+ + I AN + D L T +SH+R L +VVV
Sbjct: 255 KRGYLLHGPPGTGKTSLVAAI-ANLLEFDVYDLELTTVPTNSHLRRLLVSTTPKSVVVVE 313
Query: 277 KL 282
+
Sbjct: 314 DI 315
>05_06_0062 -
25276994-25277089,25277374-25277448,25281149-25281262,
25282220-25282321,25282422-25282519,25282698-25282791,
25282906-25282968,25283253-25283351,25283579-25283722
Length = 294
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 551 CFRTSIWDETLYKAWSSIVYKLIPNVKALESSLKQFAAIVDADEVL 688
C S WD L+KAW +K++P+ + + A +V A+E L
Sbjct: 245 CPMMSAWD--LHKAWPEAEFKMVPDAGHSANEVGVAAELVSANEKL 288
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 366 DFLHQKHISE-LQRS*IYCLFVMQNSFP*KLPD-HHNPIIENQITEETDM 223
DFL K+ SE +QRS Y V +N FP +L + P +E EE +M
Sbjct: 37 DFLTLKNSSEEIQRSQKYAELVKKNKFPHRLGSAGYAPKVERWTKEEEEM 86
>11_04_0403 +
17298498-17298713,17298799-17299696,17299874-17300592,
17301714-17301806,17301884-17302051
Length = 697
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 366 DFLHQKH-ISELQRS*IYCLFVMQNSFP*KLPD-HHNPIIENQITEETDM 223
DFL K+ + E+QRS Y + +N FP +L + P +E EE +M
Sbjct: 240 DFLTLKNSLEEIQRSQKYAEYAKKNKFPHRLGSAGYAPKVEQWTKEEEEM 289
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 LWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE-MEKDMHYYQSCL-EAILQNS 428
+WD GGQ+ + FRN + LIYV D RE + +Q+ + + ++ NS
Sbjct: 64 VWDVGGQDKLRPLW-----RQYFRNADALIYVVDSMDRERIGVAKEEFQAIIRDPLMLNS 118
Query: 429 PEARIFCLVHKMDLVAEEQREEI 497
I L +K DL E+
Sbjct: 119 V---ILLLANKQDLKGAMSSSEV 138
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +1
Query: 85 FSKMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNYGI 264
F K V ++G SGSGK+++ ++I Y + + L +D++ +R+L + + G+
Sbjct: 397 FFPAAKTVAVVGGSGSGKSTVVALIERFYDPNEGQVLLDNVDIKTLQLRWLRDQI---GL 453
Query: 265 VVVRKLSWKTILH 303
V + T +H
Sbjct: 454 VNQEPALFATTIH 466
>04_04_1345 + 32792879-32794207
Length = 442
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 351 FDVESREMEKDMHYYQSCLEAILQNSPEARIFCLVHKM 464
FD++SR + KD+H Y ++A+ ++ + F + +M
Sbjct: 201 FDMDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEM 238
>03_02_0046 -
5255513-5255630,5255715-5255876,5256579-5256733,
5256811-5256892,5257790-5257827
Length = 184
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE 371
+LWD GGQ F S + R V ++YV D RE
Sbjct: 67 KLWDLGGQPR-----FRSMWERYCRAVSAIVYVVDAADRE 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,880
Number of Sequences: 37544
Number of extensions: 379624
Number of successful extensions: 1075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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