Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20831
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)              151   7e-37
SB_58217| Best HMM Match : Ras (HMM E-Value=0.00048)                   33   0.17 
SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10)                   33   0.17 
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   31   1.2  
SB_10811| Best HMM Match : Ras (HMM E-Value=0)                         30   1.6  
SB_7436| Best HMM Match : Kinesin (HMM E-Value=0.00023)                29   3.7  
SB_53917| Best HMM Match : DUF234 (HMM E-Value=6.2)                    29   4.9  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              29   4.9  
SB_59450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)                 28   6.5  
SB_23270| Best HMM Match : Vicilin_N (HMM E-Value=4.5)                 28   6.5  
SB_27557| Best HMM Match : Ras (HMM E-Value=0)                         28   8.5  

>SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score =  151 bits (365), Expect = 7e-37
 Identities = 68/80 (85%), Positives = 76/80 (95%)
 Frame = +3

Query: 273 QEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPEARIFCL 452
           QEAFMENYFASQRDNIFR+VEVLIYVFDVESRE+EKDMHYYQSCLEAILQNSP+A+IFCL
Sbjct: 34  QEAFMENYFASQRDNIFRSVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCL 93

Query: 453 VHKMDLVAEEQREEIFRARK 512
           +HKMDLV E+QR+ IF  R+
Sbjct: 94  IHKMDLVQEDQRDMIFNERE 113



 Score =  118 bits (285), Expect = 4e-27
 Identities = 53/67 (79%), Positives = 61/67 (91%)
 Frame = +2

Query: 506 KEEDLKGLSKPLECTCFRTSIWDETLYKAWSSIVYKLIPNVKALESSLKQFAAIVDADEV 685
           +E+DL+ LSKPLECTCFRTSIWDETLYKAWSSIVY+LIPNV  LE +L+ FA+ +DADEV
Sbjct: 112 REDDLRRLSKPLECTCFRTSIWDETLYKAWSSIVYQLIPNVTQLEHNLESFASTIDADEV 171

Query: 686 LLFERAT 706
           LLFERAT
Sbjct: 172 LLFERAT 178



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 145 MRSIIFANYIARDTRRLGAT 204
           MRSIIFANYIARDTRRLGAT
Sbjct: 1   MRSIIFANYIARDTRRLGAT 20


>SB_58217| Best HMM Match : Ras (HMM E-Value=0.00048)
          Length = 472

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 24/86 (27%), Positives = 43/86 (50%)
 Frame = +3

Query: 255 LWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPE 434
           LWD  G    ME Y +  R N + N +V++ V+   S ++   +   + C ++   N+P 
Sbjct: 3   LWDTLG----MEEYESLTR-NHYSNSKVVLVVY---SLDLPDSLAQVKECTQSAQVNAPA 54

Query: 435 ARIFCLVHKMDLVAEEQREEIFRARK 512
           A+I  + +KMDL    + E   R ++
Sbjct: 55  AKIVLVANKMDLPNYRRLETDLRVKE 80


>SB_17524| Best HMM Match : Ras (HMM E-Value=2.1e-10)
          Length = 159

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 24/86 (27%), Positives = 43/86 (50%)
 Frame = +3

Query: 255 LWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPE 434
           LWD  G    ME Y +  R N + N +V++ V+   S ++   +   + C ++   N+P 
Sbjct: 62  LWDTLG----MEEYESLTR-NHYSNSKVVLVVY---SLDLPDSLAQVKECTQSAQVNAPA 113

Query: 435 ARIFCLVHKMDLVAEEQREEIFRARK 512
           A+I  + +KMDL    + E   R ++
Sbjct: 114 AKIVLVANKMDLPNYRRLETDLRVKE 139


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 330 VEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPEARIFCLVHKM 464
           V  L  + D       K+ +YY+SCLEAI ++  +  +  L+ K+
Sbjct: 139 VSSLEILVDAAKFSSHKEANYYESCLEAIREHVHDGNVRTLLQKL 183


>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDV 359
           QLWD  GQE F ++       + +RNV  +++++D+
Sbjct: 98  QLWDTAGQERFRKSMVC----HYYRNVNAVVFMYDI 129


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 354 DVESREMEKDMHYYQSCLEAILQNSPEARIFCLVHKMDLVAEEQREEIFRAR 509
           D++ RE +K  H  Q   E  +Q   E R     HK D   E  R+E  R R
Sbjct: 97  DLQERERQKLEHAQQRKRELEIQAEQETRHLLAAHKQDRGIEPHRDESTRNR 148


>SB_10811| Best HMM Match : Ras (HMM E-Value=0)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +3

Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSP 431
           Q+WD  GQE      F S   + +R     + V+D+ SRE    +  + +  +A    SP
Sbjct: 147 QIWDTAGQER-----FRSVTRSYYRGAAGALLVYDISSRETFNSLTNWLT--DARTLASP 199

Query: 432 EARIFCLVHKMDLVAEEQ 485
              I  + +K DL A+ +
Sbjct: 200 NIVIILVGNKKDLDADRE 217


>SB_7436| Best HMM Match : Kinesin (HMM E-Value=0.00023)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 52  TKI*TPDLEHFFSKMKKKVLLMGKSGSGKT 141
           T + TP L+ FF      VL  G++GSGKT
Sbjct: 68  TDVVTPLLDGFFKGYNATVLAYGQTGSGKT 97


>SB_53917| Best HMM Match : DUF234 (HMM E-Value=6.2)
          Length = 189

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 413 DFTELSRSQDILFSTQNGLSGRRTKRRNIQSKEEDLK 523
           +F EL+  QD+   T  GL   +   R+++S E+D K
Sbjct: 56  EFKELNNDQDLGIKTGKGLRPPKLSLRDVRSPEQDEK 92


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 413 DFTELSRSQDILFSTQNGLSGRRTKRRNIQSKEEDLK 523
           +F EL+  QD+   T  GL   +   R+++S E+D K
Sbjct: 583 EFKELNNDQDLGIKTGKGLRPPKLSLRDVRSPEQDEK 619


>SB_59450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 112 LMGKS-GSGKTSMRSIIFANYIARDTRRLGAT 204
           L G+S G G+TS +S +F N +A  T   GAT
Sbjct: 35  LFGQSTGFGQTSQQSSLFGNKLATSTTGFGAT 66


>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESR 368
           Q WD  GQE F          + +RN + +I VFD+ +R
Sbjct: 63  QCWDTAGQEKFR-----GITQSYYRNADAVILVFDITNR 96


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 112 LMGKS-GSGKTSMRSIIFANYIARDTRRLGAT 204
           L G+S G G+TS +S +F N +A  T   GAT
Sbjct: 405 LFGQSTGFGQTSQQSSLFGNKLATSTTGFGAT 436


>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 100 KKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV 249
           KKV ++G SGSGK+++  ++F  +  +  R L A  D+    +  L  +V
Sbjct: 438 KKVAIVGGSGSGKSTIVRLLFRFFDPQGGRVLVAGQDIRDFSLESLRKVV 487


>SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)
          Length = 775

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 155 IDLILVLPEPLFPINSTFFFILEKKCSRSGVQIFV 51
           I+ +L++ E   P+ STF  ++E+ CS +   + V
Sbjct: 668 INTLLLVMEQTCPLTSTFLLVMEQTCSLTSTFLLV 702


>SB_23270| Best HMM Match : Vicilin_N (HMM E-Value=4.5)
          Length = 143

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 472 WQKNKEKKYSEQGRRFKRAFQTIRMH 549
           W +NKE++   + RR +R FQ  + H
Sbjct: 78  WSRNKERQIKREKRRARREFQRKQKH 103


>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
          Length = 184

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE-MEKDMHYYQSCLEAILQNS 428
           Q+WD  GQE F    +     + +RN    + ++D+ +R+     M +Y+   + +    
Sbjct: 66  QIWDTAGQERFRSITY-----SYYRNTVGCLIIYDITNRDSFVNVMDWYKEAKQCV--EE 118

Query: 429 PEARIFCLVHKMD 467
            E     + HK+D
Sbjct: 119 AEVVFMLVGHKID 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,770
Number of Sequences: 59808
Number of extensions: 460903
Number of successful extensions: 1078
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)