Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20831
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putati... 33 0.25
At3g18820.1 68416.m02390 Ras-related GTP-binding protein, putati... 31 0.99
At1g18200.1 68414.m02264 Ras-related GTP-binding family protein ... 30 1.7
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 29 2.3
At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putati... 29 4.0
At5g64990.1 68418.m08174 Ras-related GTP-binding protein, putati... 28 5.3
At2g44610.1 68415.m05553 Ras-related GTP-binding protein, putati... 28 5.3
At4g39890.1 68417.m05651 Ras-related GTP-binding family protein ... 28 7.0
At4g18050.1 68417.m02686 ABC transporter family protein contains... 28 7.0
At1g28550.1 68414.m03513 Ras-related GTP-binding protein, putati... 28 7.0
At5g39620.1 68418.m04798 Ras-related GTP-binding protein, putati... 27 9.2
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 27 9.2
At1g52280.1 68414.m05899 Ras-related GTP-binding protein, putati... 27 9.2
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 27 9.2
>At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putative
contains Pfam profile: PF00071 Ras family
Length = 206
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 237 R*FGSQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 416
R F Q+WD GQE F A +R + + V+DV S + +D++ ++ E +
Sbjct: 55 RLFTLQIWDTAGQERFQSLGVA-----FYRGADCCVLVYDVNSAKSFEDLNNWRE--EFL 107
Query: 417 LQNSP 431
+Q SP
Sbjct: 108 IQASP 112
>At3g18820.1 68416.m02390 Ras-related GTP-binding protein, putative
similar to Ras-related protein RAB7 GI:1370186 from
[Pisum sativum], Plant Mol. Biol. 21 (6), 1195-1199
(1993); contains Pfam profile: PF00071 Ras family
Length = 206
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 237 R*FGSQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 416
R F Q+WD GQE F A +R + + V+DV S + ++++ ++ E +
Sbjct: 55 RLFTLQIWDTAGQERFQSLGVA-----FYRGADCCVLVYDVNSMKSFENLNNWRE--EFL 107
Query: 417 LQNSP 431
+Q SP
Sbjct: 108 IQASP 112
>At1g18200.1 68414.m02264 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 354
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +3
Query: 249 SQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNS 428
+Q+WD GQE F + + +R + ++D+ R K++ + S L +S
Sbjct: 64 AQIWDTAGQER-----FRAITSSYYRGALGALLIYDITRRITFKNIEKWLSELRGF--SS 116
Query: 429 PEARIFCLVHKMDLVAEEQREE 494
PE + + +K DL + EE
Sbjct: 117 PETVVVLVGNKSDLGQSREVEE 138
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +1
Query: 97 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNYGIVVVR 276
K+ LL G G+GKTS+ + I ANY+ D L E + +R L N I++V
Sbjct: 245 KRGYLLYGPPGTGKTSLVAAI-ANYLKFDIYDLQLASVREDADLRRLLLGTTNSSILLVE 303
Query: 277 KLSWKTILH 303
+ LH
Sbjct: 304 DIDCAVDLH 312
>At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putative
similar to Rab2-like GTP-binding protein GI:1765896 from
[Arabidopsis thaliana]
Length = 211
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQN-S 428
Q+WD GQE+ F S + +R + V+D+ RE ++ S LE Q+ +
Sbjct: 58 QIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRE---TFNHLASWLEDARQHAN 109
Query: 429 PEARIFCLVHKMDL 470
P I + +K DL
Sbjct: 110 PNMSIMLIGNKCDL 123
>At5g64990.1 68418.m08174 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:550072 from [Homo
sapiens]
Length = 206
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 237 R*FGSQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE 371
R F QLWD GQE F S + R+ V + V+DV S++
Sbjct: 54 RTFRLQLWDTAGQER-----FKSLVPSYIRDSSVAVIVYDVASKQ 93
>At2g44610.1 68415.m05553 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:623586 from [Nicotiana
tabacum] ; contains an ADP-ribosylation factors family
signature for proteins involved in protein trafficking
Length = 208
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE 371
QLWD GQE F S + R+ V + V+DV SR+
Sbjct: 61 QLWDTAGQER-----FRSLIPSYIRDSSVAVIVYDVASRQ 95
>At4g39890.1 68417.m05651 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 214
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 252 QLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESRE 371
QLWD GQE F S + R+ V I V+DV +R+
Sbjct: 61 QLWDTAGQER-----FRSLIPSYIRDSSVAIVVYDVSNRQ 95
>At4g18050.1 68417.m02686 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 100 KKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL 237
K V L+G+SGSGK+++ S+I Y + L ID++ ++++
Sbjct: 384 KTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWI 429
>At1g28550.1 68414.m03513 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303742 from (Pisum
sativum)
Length = 218
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 103 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVE 216
KV+L G SG GK+++ S N + D+R ATI VE
Sbjct: 15 KVVLTGDSGVGKSNLLSRFTRNDFSHDSR---ATIGVE 49
>At5g39620.1 68418.m04798 Ras-related GTP-binding protein, putative
similar to GTP-binding protein RAB7A GI:1370182 from
[Lotus japonicus]
Length = 204
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 91 KMKKKVLLMGKSGSGKTSM 147
K K K++L+G SG GKTS+
Sbjct: 3 KTKLKIILLGDSGVGKTSL 21
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 100 KKVLLMGKSGSGKTSMRSIIFANY 171
K + L+G+SGSGK+S+ S+I Y
Sbjct: 1019 KSMALVGQSGSGKSSVISLILRFY 1042
>At1g52280.1 68414.m05899 Ras-related GTP-binding protein, putative
similar to RAB7D GI:1370187 from [Lotus japonicus]
(Plant J. 11 (2), 237-250 (1997)); contains Pfam
PF00071: Ras family
Length = 206
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 237 R*FGSQLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 416
R F Q+WD GQE F A +R + + V+DV + +++ ++ E +
Sbjct: 55 RIFTLQIWDTAGQERFQSLGVA-----FYRGADCCVLVYDVNVMKSFDNLNNWRE--EFL 107
Query: 417 LQNSP 431
+Q SP
Sbjct: 108 IQASP 112
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 100 KKVLLMGKSGSGKTSMRSIIFANY 171
K + L+G+SGSGK+S+ S++ Y
Sbjct: 1011 KSMALVGQSGSGKSSVLSLVLRFY 1034
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,444
Number of Sequences: 28952
Number of extensions: 333059
Number of successful extensions: 1076
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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