Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20830
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7XGQ7 Cluster: Retrotransposon protein, putative, Ty3-...    34   2.8  
UniRef50_Q1N3N4 Cluster: Quinone oxidoreductase; n=3; Proteobact...    33   8.6  

>UniRef50_Q7XGQ7 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=4; Oryza sativa|Rep:
           Retrotransposon protein, putative, Ty3-gypsy subclass -
           Oryza sativa subsp. japonica (Rice)
          Length = 824

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 24/92 (26%), Positives = 36/92 (39%)
 Frame = +2

Query: 2   MNPRHKXCPPRSRDALSIVRKTRHERDVEAAAAITLFHVATXHYLEVQNKKVIRKRLKKD 181
           + P  K  PPR   A    +KTR ER     A   LF       +  +  +   +R+  D
Sbjct: 358 VQPTKKVLPPRPSQAPMTCKKTRAERGKVRNAEGVLFLHQDPLIISAEIARFKVRRILVD 417

Query: 182 SGSLKYIVTDQGSVARSKMTSGREEAQTLCRG 277
            GS  Y++  +       +T    +A TL  G
Sbjct: 418 GGSSAYVIFAEAYTRMGFLTLALSQALTLLHG 449


>UniRef50_Q1N3N4 Cluster: Quinone oxidoreductase; n=3;
           Proteobacteria|Rep: Quinone oxidoreductase -
           Oceanobacter sp. RED65
          Length = 323

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 288 DSNLGTDVSAGEHRKNRSRLSTELHGVNVEPP*LFSGLIRFRPP 419
           DS    DV + E +KN+ R+  E  GVN     L  GL + +PP
Sbjct: 13  DSLTIADVDSPEPKKNQVRIKAEAMGVNFPDGLLVQGLYQMKPP 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,597,415
Number of Sequences: 1657284
Number of extensions: 12534902
Number of successful extensions: 30985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30977
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)