Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20830
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.7  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   7.7  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  AITLFHVATXHYLEVQNKKVIRKRLKKDSGSLKYI 202
           ++T       H++E+ NK+V   + K D  S++Y+
Sbjct: 83  SVTAIENVVKHFIELANKRVQEAQEKADKISVEYV 117


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 671 YDLQSLISLNRMITNNSDVRTIRRRLPSILEGKHIFFK 558
           +D+ SLI  NR  ++    RT+   +  ILE K   F+
Sbjct: 439 HDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFR 476


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 408 FRPPFSVALYLRLYTSF*AERKSKRRERMPNAAKFQNILLMR 533
           FRPP   +L  R    F AE       R PN  K  +I+  R
Sbjct: 272 FRPPLDTSLLRRYVRYFIAEYTFASTLRHPNIIKVLDIIYKR 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,937
Number of Sequences: 5004
Number of extensions: 55454
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)