Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20830
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)                 30   1.5  
SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)                     29   4.6  
SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14)                   28   6.1  
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 28   8.1  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
          Length = 431

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 53  IVRKTRHERDVEAAAAITLFHVATXHY 133
           +++ TR    V  A A TLFH AT HY
Sbjct: 1   MIKTTRTSLKVATAIATTLFHTATTHY 27


>SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)
          Length = 408

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 161 RKRLKKDSGSLK--YIVTDQGSVARSKMTSGREEAQTLCRGIKHRLQSW 301
           RKR ++DSG  +  YIV+D   +    +  G +E    C G+K  L SW
Sbjct: 348 RKR-RRDSGGHREMYIVSDADQITLRALLPG-QELNNKCSGMKRCLFSW 394


>SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14)
          Length = 189

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/83 (20%), Positives = 35/83 (42%)
 Frame = +2

Query: 8   PRHKXCPPRSRDALSIVRKTRHERDVEAAAAITLFHVATXHYLEVQNKKVIRKRLKKDSG 187
           P H  C   SR+ ++++ +     D+EA   +    +   H   +Q    +   L +   
Sbjct: 101 PLHYACRRGSREVVALLLEALDRPDIEARNKL---FMTPLHVAAIQGDLEVFSMLVEKGA 157

Query: 188 SLKYIVTDQGSVARSKMTSGREE 256
           + K + TD  ++    +T+G  E
Sbjct: 158 NYKAVGTDDSTLIHLAVTAGNTE 180


>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 223 SQEQNDKRPRRGANPLSRNKTPTPILVQT*APVNIAKTVHACLRNFT 363
           S+  N + PR  AN  +RNKT T       AP+++    HA +R  T
Sbjct: 545 SRHANAQTPRH-ANVRTRNKTRTRTYTHPDAPIHVHAPRHANVRTRT 590


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 247 PRRGANPLSRNKTPTPILVQT*APV 321
           P RG +P SR K P P   +T +PV
Sbjct: 534 PARGVSPASRGKRPAPPAPRTSSPV 558


>SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +3

Query: 264 PFVAE*NTDSNLGTDVSAGEHRKNRSRLSTELHGV 368
           PFV   N D   G D  A    K R   S  LHGV
Sbjct: 29  PFVKRLNRDLRAGLDPRAARDFKLRGTASVRLHGV 63


>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 374 HINAVKFRRQA*TVFAMFTGAHVCTKIGVGVLFRDKGFAPLRGRLSFCSWLQNLDRLQYI 195
           +I+ V++RR      A  TG+++  K  +  L     +  L   LSF  +L++     Y+
Sbjct: 377 YIDIVEYRRVGIWNSAYVTGSYLIQKDVLPKLKHAYSYGNLEPDLSFSKYLRDNGIFMYV 436

Query: 194 SMIHY 180
           + +HY
Sbjct: 437 TNMHY 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,770,479
Number of Sequences: 59808
Number of extensions: 407974
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)