Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20830
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    32   0.33 

>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -1

Query: 424 LNGGRKRIKPLNSYGGSTLTP*SSVDRRERFLRCSPALTSVPRLESVFYSATKGLRL--F 251
           +N G++R   L S   S  T  S +DR  RF++C   +  V      F+S   GL +  +
Sbjct: 238 INAGKQRAIAL-SRSQSDNTQ-SKIDRSSRFIQCIIIIFVVTEFPQGFFSVVGGLSINDY 295

Query: 250 AAACHFAPGYRTLIGYNIFQ*STIFFQTLSNNF 152
                F   +  L+ Y     S I + TLS+ F
Sbjct: 296 INYFQFFSVFTNLLAYFNTTTSFIIYSTLSSKF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,629
Number of Sequences: 27780
Number of extensions: 309632
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)