Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20830
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 374 GAAITVQWLDSFPSAVQCRFIFTTVYEFLSRTKIEEKRENAKRRKISKH 520
           G  I   ++  +PS+VQ   +   V  FLS T+  E     K  + S H
Sbjct: 212 GRRINCTYVALYPSSVQVIALGVGVSNFLSSTRTAETGTIRKCDESSPH 260


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 29   PRSRDALSIVRKTRHERDVEAAAAIT 106
            PR RD      KT+    V AAAA T
Sbjct: 1088 PRKRDQKQSDDKTKETSTVTAAAAAT 1113


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 342  VNGFCDVHRRSRLYQDWSRCFIPRQRV-CAS 253
            VN  C +HR      D   CF  R  V CAS
Sbjct: 1683 VNKHCTIHRTQVKETDDKICFTMRPVVSCAS 1713


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,318
Number of Sequences: 438
Number of extensions: 4294
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)