Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20829
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    27   4.0  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    27   4.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.3  

>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 VLDQGPHFAHQISTGYSNVHQDALSNVDL 198
           +LDQ PHF +  +T    VH D  +  +L
Sbjct: 222 ILDQRPHFFYSPATPTGKVHFDVSNTTEL 250


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 VLDQGPHFAHQISTGYSNVHQDALSNVDL 198
           +LDQ PHF +  +T    VH D  +  +L
Sbjct: 222 ILDQRPHFFYSPATPTGKVHFDVSNTTEL 250


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 242 FDWSMWFESPPTSELRSTLESAS 174
           F+W  W  S  TS+  S L SAS
Sbjct: 317 FEWGSWVSSQDTSKNSSNLASAS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,211
Number of Sequences: 5004
Number of extensions: 69865
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)