Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20829
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088... 33 0.34
06_02_0239 + 13384451-13387124,13387234-13387631 32 0.59
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 31 1.0
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 31 1.0
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 31 1.4
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 30 1.8
06_01_0114 - 892599-893070,894115-894457,894896-895151 30 2.4
04_03_0717 - 18999057-18999175,18999267-18999303,18999453-189996... 30 2.4
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824 30 2.4
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.1
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 29 4.1
04_04_0207 + 23602065-23604315,23604611-23605116 29 5.5
04_04_0598 - 26514226-26514545,26516080-26516302 28 7.2
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 28 7.2
02_05_1332 + 35758657-35758728,35758959-35760689 28 9.6
>01_06_1689 +
39204726-39205131,39208214-39208602,39208686-39208820,
39208936-39209001,39209150-39209218,39209402-39209455
Length = 372
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 467 STETATIQFAHPVRSYSGGGHSIHTGLNTPKKPIKFRDSVPAGLLEHVGQTTHG 628
ST A HP+ GG IH ++ P+ S PAGLL + HG
Sbjct: 83 STAAAADVGRHPLERAYGGSGEIHVDASSAAVPLFRHSSSPAGLLSRLMADPHG 136
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 67 PPPVHEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQDALSNVDLNSLVGGDSNHID 234
PP +H + N Q + + HF+ + G S +H L N+ N +VG S +D
Sbjct: 295 PPSLHNV-TNIQSIRMSHN--HFSGSVPPGLSGLHNLVLYNIGFNQIVGNTSVLVD 347
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 592 RLTGARG----SDHTRQGHPDDRQSYPGTGVPTAAHQRRQRGQSS 714
R GARG SD G D + PGT VP A +R Q+G ++
Sbjct: 510 RAYGARGHLPVSDVPHGGCGTDAPTIPGTAVPVATQRRHQQGDTA 554
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 592 RLTGARG----SDHTRQGHPDDRQSYPGTGVPTAAHQRRQRGQSS 714
R GARG SD G D + PGT VP A +R Q+G ++
Sbjct: 764 RAYGARGHLPVSDVPHGGCGTDAPTIPGTAVPVATQRRHQQGDTA 808
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +3
Query: 315 PSQRPFDS---YGAPPLDSLSGGPY---PPSVRQQGAKG 413
PS +P+ S YGAPP G PY PPS GA G
Sbjct: 66 PSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSAPYGAPG 104
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +1
Query: 1 PVGHVEETVFQNVGVSDHYGLPPPPVHEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQDA 180
P G T+F+ V + G P H+ QL DQ P +S H+D
Sbjct: 1070 PSGPQHNTLFK--WVKESAGPSQGPQHKYPELPGQLKSSDQTPKLGSSSPLSFSYSHKDV 1127
Query: 181 LSNVDLNSLVGGDSNH-IDQSKTV-FELT-IPRTMIHRLT*LS 300
N+ +++ + H + +S T+ F+ T IP+T L LS
Sbjct: 1128 WDNISSSNVPSSGTTHTMPKSSTLTFKTTVIPKTNTSTLPDLS 1170
>06_01_0114 - 892599-893070,894115-894457,894896-895151
Length = 356
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +2
Query: 416 DPAFRSVRRATGQSIWCSTETATIQFAHPVRSYSGGGHSIHTGLNTPKKPIKFRDSVPA- 592
DP RR G+ CS E AHP Y +H G N +KP++ + + PA
Sbjct: 97 DPEPWRCRRTDGKKWRCSKE------AHPDSKYCE--RHMHRGRNRSRKPVESKTAAPAP 148
Query: 593 ---GLLEHVGQTTHGKDTLTIDNLTQG 664
L +V TH D + +LT G
Sbjct: 149 QSQPQLSNVTTATHDTDA-PLPSLTVG 174
>04_03_0717 -
18999057-18999175,18999267-18999303,18999453-18999668,
19000429-19000551,19000955-19001236,19002666-19002877,
19003481-19003661
Length = 389
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +2
Query: 392 KATRSQRPD--PAFRSVRRATGQSIWCSTET--ATIQFAHPVRSYSGGGHSIHTGLNTPK 559
K+T + RP P+F+ ++ G + + E AT+Q A P+ + + +
Sbjct: 273 KSTGAPRPGSLPSFQEIKDTLGFNRYYKEEKQYATVQQAQPLST----NIVLRLKITEKS 328
Query: 560 KPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQG 664
K + +PAG+LE + + G + + + QG
Sbjct: 329 GTQKINEGIPAGILEKISKAIPGLAGVNLTEILQG 363
>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
Length = 613
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 386 VCKATRSQRPDPAFRSVRRATGQSIWCSTETATIQFAHPVRSYSG 520
VC AT + PD R + R + CS A + F R YSG
Sbjct: 3 VCNATAALPPDCDLRQLARIEALVLLCSVVLALLVFLGSSRRYSG 47
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 243 DSVRAHYTENHDPQADLAFIQSSIPSQRPFDSYGAPPLDSLSGGPYPP 386
D + AHY E DP + +A ++ +PS RP P + + +G YPP
Sbjct: 88 DVLAAHYGEEEDPSSKVAKVE--VPSLRP------PVMPNPAGMVYPP 127
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 204 ACWWRFEPHRPVEDSVRAHYTENHDPQADLAFIQSSIPSQRPF 332
AC W + P+ED++ AH H PQ L I S+ R F
Sbjct: 584 ACLWAKLVNDPLEDALLAHPQNCHKPQVPLDAILRSLWHIRRF 626
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 122 WSRTGSCCSFTCISCTGGGG 63
WSR+ C+++ ++CT GGG
Sbjct: 61 WSRSTPYCNWSHVTCTAGGG 80
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 567 LSSEIPFLQAYWSTWVRP 620
+ SE+P L YW+TW P
Sbjct: 88 MESELPVLVGYWATWCGP 105
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 466 LHRNRHHPICPSRTELLRRWSLHP 537
L+++ +H I P LLRRW HP
Sbjct: 704 LYKHLNHCITPCGKRLLRRWICHP 727
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 327 PFDSYGAPPLDSLSGGPYPPSVRQQGA 407
P S+ PPLD L G P P QQ A
Sbjct: 17 PKCSFRHPPLDGLVGAPTTPRTSQQSA 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,603,929
Number of Sequences: 37544
Number of extensions: 556915
Number of successful extensions: 1854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1852
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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