Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20829
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     36   0.037
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)                        34   0.11 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          31   0.79 
SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     29   5.6  
SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)                28   7.4  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     28   9.8  
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                28   9.8  
SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)             28   9.8  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 610  GSDHTRQGHPDD---RQSYPGTGVPTAAHQRRQRGQSSHIIRHKSIYRTNGFVQ 762
            G DH R+GH      R S P T   ++     Q+G S+    H+  Y+TNG VQ
Sbjct: 1046 GDDHPRKGHACGVMGRPSMPSTTKRSSYATATQKGNSTGRENHRESYQTNGMVQ 1099


>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
          Length = 356

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 551 YSSRCGWSDHLLSSSVRDGQIGWWRFRWSTILTAR 447
           + +RCG+  H   S+ R+ Q+GWW   W     AR
Sbjct: 7   HRNRCGFVSHGHYSNHREAQVGWWLSHWPLDTAAR 41


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 79  HEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQDALSNVDLNSLVGG 216
           +E   NE+ LP LD        +S    NV++     +D NSL GG
Sbjct: 100 NETSANEESLPELDISNEDPKSLSKDMLNVNKQNTDTIDTNSLSGG 145


>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +2

Query: 554 PKKPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQGPAYLPPPIRDAKEVNHHTSFGIN 733
           P  P + RD   + LLE   Q   G      ++L     Y+ PP    +  N  T FG++
Sbjct: 5   PYYPSRMRDFRVSSLLEGCPQFIAGTAPSIPNSLNSNSPYIYPPYHPQQLANKPTHFGLS 64

Query: 734 LSI 742
             I
Sbjct: 65  AGI 67


>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 PQADLAFIQSSIPSQRPFDSYGAPPLDSLSGGPYPP 386
           P A +  + + +P + P  +   PPLD L   P PP
Sbjct: 178 PAASVRLVNTRMPDESPEPTRPPPPLDDLDDLPPPP 213


>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 140 CAK*GPWSRTGSCCSFTCISCTGGGGR 60
           C+K   W +    C+ +C SC GGGGR
Sbjct: 52  CSKNPDWMKAN--CAKSCNSCGGGGGR 76


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 67  PPPVHEIHVNEQQLPVLDQGPHFAHQISTGYS 162
           PP VH +   E   PV D  PH +  +S G S
Sbjct: 125 PPTVHRMTGPEPLPPVADTSPHMSEPVSRGPS 156


>SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1380

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 616  DHTRQGHPDD---RQSYPGTGVPTAAHQRRQRGQSSHIIRHKSIYRTNGFVQ 762
            D+ R+GH      R S P T   ++     Q+G S+H   H+   + NG VQ
Sbjct: 1095 DYPRKGHACGVMGRPSTPSTTKRSSYATATQKGNSTHRENHRESCQMNGMVQ 1146


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 616  DHTRQGHPDD---RQSYPGTGVPTAAHQRRQRGQSSHIIRHKSIYRTNGFVQ 762
            D+ R+GH      R S P T   ++     Q+G S+    H+  Y+ NG VQ
Sbjct: 1456 DYPRKGHACGVMGRPSTPSTTKRSSYATAAQKGNSTGRENHRESYQMNGMVQ 1507


>SB_13090| Best HMM Match : Atrophin-1 (HMM E-Value=1.8)
          Length = 988

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 398 TRSQRPDPAFRSVRRATGQSIWCSTETATIQFAHPVRSYSGGGHSIHTGLN--TPKKPIK 571
           T +QRP  ++   +R      W  +  + + FA P       G+  H  L+  + + P K
Sbjct: 364 TDTQRPTTSWTDAQRPA--VTWNDSPLSQLSFASP----DDKGYENHRALSPFSFQTPGK 417

Query: 572 FRDSVPAGLLEHVGQTTHGKD 634
           FRDS P G      +TT  +D
Sbjct: 418 FRDSSPPGEASTSDETTPRQD 438


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 616  DHTRQGHPDD---RQSYPGTGVPTAAHQRRQRGQSSHIIRHKSIYRTNGFVQ 762
            D+ R+GH      R S P +   ++     Q+G S     H+  Y+TNG VQ
Sbjct: 1739 DYPRKGHACGVMGRPSTPSSTKRSSYATATQKGNSIGRENHRESYQTNGMVQ 1790


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 479 ATIQFAHPVRSYSGGGHSIHTGLNTPKKP 565
           A +   H +RS     HS+H   N+P  P
Sbjct: 104 ANLVLRHSIRSCHSSNHSVHNNYNSPISP 132


>SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)
          Length = 285

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 631 GHPDDR----QSYPGTGVPTAAHQRRQRGQSS 714
           G PDD     Q+ PG GVP+AA Q R+   SS
Sbjct: 86  GWPDDPHEEFQATPGAGVPSAAAQERELVTSS 117


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 631 GHPDDR----QSYPGTGVPTAAHQRRQRGQSS 714
           G PDD     Q+ PG GVP+AA Q R+   SS
Sbjct: 865 GWPDDPHEEFQATPGAGVPSAAAQERELVTSS 896


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,951,794
Number of Sequences: 59808
Number of extensions: 596292
Number of successful extensions: 1908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)