Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20829
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 29 4.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.9
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 29 4.9
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 28 6.5
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 28 6.5
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 6.5
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 6.5
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical pr... 28 8.6
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 407 GSLLPYRRRVGSTRERVQWRSAVRIKRSLT 318
GS+LP RR + + R + +SAVR +RSL+
Sbjct: 802 GSMLPKRRNSPARQHRSRSKSAVRSQRSLS 831
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 258 HYTENHDPQADLAFIQSSIPSQRPFDSYGAPPLDSLSGGPYPP 386
H NH+ + +SS PS P PP D L+ P PP
Sbjct: 1317 HIQANHEDSDSFSTSRSSSPSPPPPPPPPPPPSDDLTPVPPPP 1359
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 407 GSLLPYRRRVGSTRERVQWRSAVRIKRSLT 318
GS+LP RR + + R + +SAVR +RSL+
Sbjct: 800 GSMLPKRRNSPARQHRSRSKSAVRSQRSLS 829
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 548 NTPKKPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQGPAYLP 679
N+ KP+ S P G +H GQ T+GK+ ++++ G + P
Sbjct: 11 NSLYKPLNLIKSKPDGCFKHNGQCTYGKN--LVESVDDGNSRTP 52
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 548 NTPKKPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQGPAYLP 679
N+ KP+ S P G +H GQ T+GK+ ++++ G + P
Sbjct: 11 NSLYKPLNLIKSKPDGCFKHNGQCTYGKN--LVESVDDGNSRTP 52
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 548 NTPKKPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQGPAYLP 679
N+ KP+ S P G +H GQ T+GK+ ++++ G + P
Sbjct: 11 NSLYKPLNLIKSKPDGCFKHNGQCTYGKN--LVESVDDGNSRTP 52
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 58 GLPPPPVHEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQDALSNVDLNSLVGGD 219
G PPP H++ ++ + Q H HQ+ HQ + ++N+++ G+
Sbjct: 459 GHPPPMHHQMQQGPPRMMYMHQQHHPMHQVEDQMQRQHQ-RMQQPNMNNIMHGN 511
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 58 GLPPPPVHEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQDALSNVDLNSLVGGD 219
G PPP H++ ++ + Q H HQ+ HQ + ++N+++ G+
Sbjct: 459 GHPPPMHHQMQQGPPRMMYMHQQHHPMHQVEDQMQRQHQ-RMQQPNMNNIMHGN 511
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 79 HEIHVNEQQLPVLDQGPHFAHQISTGYSNVHQD 177
H+ H+N P QG + HQ G N+H D
Sbjct: 26 HKDHINPNPQPY-HQGNAYEHQAYQGLQNIHDD 57
>Z81093-3|CAB03147.1| 610|Caenorhabditis elegans Hypothetical
protein F58D2.2 protein.
Length = 610
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 392 KATRSQRPDPAFRSVRRATGQSIWCSTETATIQFAHPVRSYSGGGHSIHTGLNTPK 559
KA + ++P+ S ++AT ST T++I FA+ Y+ G ++ T L TP+
Sbjct: 163 KAPKPEKPETNICSDKKATYPE--GSTPTSSILFANEGNCYAKVGSTLITLLETPE 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,010
Number of Sequences: 27780
Number of extensions: 418467
Number of successful extensions: 1370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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