Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20829
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s...    31   0.65 
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    29   2.6  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    29   2.6  
At5g66830.1 68418.m08426 F-box family protein contains F-box dom...    29   3.5  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    29   3.5  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    29   3.5  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    29   4.6  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    28   8.0  
At2g02515.1 68415.m00191 expressed protein                             28   8.0  
At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5) (A...    28   8.0  

>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
           similar to Chain A, Crystal Structure Of Human
           Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
           GI:20150581
          Length = 605

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 555 LKSPLSS-EIPFLQAYWSTWVRPHTAR 632
           + SPL + E PFL+ YW+ W   H+AR
Sbjct: 434 IPSPLKNVEKPFLKKYWARWKADHSAR 460


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 40  GVSDHYGLPPPPVHEIHVNEQQLPVL--DQGPHFAHQISTGYSNVHQDALSNVDLNSLVG 213
           G S HY  PP P   +++N+++ PVL  ++G      I  G+       +S    +  +G
Sbjct: 396 GPSVHYPNPPNPSKVLYINKKEAPVLKVERGVPVKFSIEAGHD------VSFYITSDFLG 449

Query: 214 GDSNHIDQSKTVF 252
           G+++  ++++T++
Sbjct: 450 GNASLRNRTETIY 462


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 401 RSQRPDPAFRSVRRATGQS--IWCSTETATIQFAHPVRSYSGGGHSIHTGLNTPKKPIKF 574
           RS    P  R  RR +G+   +W  T  A+ + A P+R  S     +  G + P    KF
Sbjct: 41  RSHSSSPK-RPSRRNSGEGTPLWRKTGAASFRHASPLRKESHSKDGVAGGGDGPSAG-KF 98

Query: 575 RDSVPAGLLEHVGQTTH 625
            D     +L+ + Q  H
Sbjct: 99  TDKQYLNILQSMAQAVH 115


>At5g66830.1 68418.m08426 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 394

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 319 LGMDDWMKAKSACGSWFSV 263
           LG  D+ +AKS C SW SV
Sbjct: 35  LGFADFQRAKSVCSSWLSV 53


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +2

Query: 563 PIKFRDSVPAGLLEHVGQTT---HGKDTLTIDNLTQ---GPAYLPPPIRDAKEVNHHT 718
           P   +D  PA L  +   T+   HG D  T+        GPA LP  +  + +VN H+
Sbjct: 661 PTVLKDDSPATLQSYEPNTSQHQHGDDKFTVKEFVSSVPGPAPLPLHVEPSHQVNSHS 718


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +3

Query: 261 YTENHDPQADLAFIQSSIPSQRPF----DSYGAPPLDSLSGGPYPPSVRQQGAKGLI 419
           Y   H  QAD  + Q   P  RP      S  APP DS+S  P   S  QQ A   +
Sbjct: 423 YHHGHSQQADHDYPQQPGPGSRPNPPHPSSVSAPPPDSVSAAPSGSS--QQSADAAV 477


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 137 AK*GPWSRTGSCCSFTCISCTGGGGR 60
           +K  PW++T  CCS+  ++C    G+
Sbjct: 52  SKSSPWNKTTDCCSWDGVTCDDKSGQ 77


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 342 GAPPLDSLSGGPYPPSVRQQGAK 410
           G PP DS SG   PP+ +QQG +
Sbjct: 630 GHPPQDSSSGRAPPPTQQQQGER 652


>At2g02515.1 68415.m00191 expressed protein
          Length = 91

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  PPPPVHEIHVNEQQLPVLDQGP 129
           PPPP H+  ++ QQ PV+   P
Sbjct: 58  PPPPNHDAMISVQQFPVIPYCP 79


>At1g16540.1 68414.m01981 molybdenum cofactor sulfurase (LOS5)
           (ABA3) identical to molybdenum cofactor sulfurase
           (LOS5/ABA3) [Arabidopsis thaliana] GI:15407262;
           supporting cDNA gi|15407261|gb|AY034895.1|
          Length = 819

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 49  DHYGLPPPPVHEIHVNEQQLPVLDQG-PHFAHQISTGYSNVHQDALSNVDLNSLVGGDSN 225
           D+YG P  P +   + + +   LD+G  +  H  ST YS +  + +     +++ G   +
Sbjct: 10  DYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFTSNVFGNPHS 69

Query: 226 HIDQSKTVFEL 258
             D S    +L
Sbjct: 70  QSDISSATSDL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,227
Number of Sequences: 28952
Number of extensions: 403479
Number of successful extensions: 1236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)