Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20828
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 156 2e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 155 3e-38
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 31 1.1
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.3
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 28 5.6
03_06_0610 + 35052455-35053429,35054936-35055511 28 5.6
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 28 5.6
06_03_0142 + 17208577-17209485,17209578-17210195 28 7.5
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 7.5
05_03_0259 - 11161447-11161706,11161764-11164266 28 7.5
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 9.9
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 9.9
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 156 bits (378), Expect = 2e-38
Identities = 73/86 (84%), Positives = 78/86 (90%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSG
Sbjct: 56 FRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSG 115
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PRED+TRIG AG VRRQAVD+SPLRR
Sbjct: 116 PREDATRIGSAGAVRRQAVDISPLRR 141
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 139 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK 188
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +1
Query: 118 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRF 255
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRF
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRF 56
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 155 bits (376), Expect = 3e-38
Identities = 72/86 (83%), Positives = 78/86 (90%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSG
Sbjct: 57 FRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSG 116
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PRED+TRIG AG VRRQAVD+SPLRR
Sbjct: 117 PREDATRIGSAGAVRRQAVDISPLRR 142
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 140 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK 189
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRF 255
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRF
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRF 57
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 30.7 bits (66), Expect = 1.1
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +3
Query: 345 IVKHAFEIIHLLTGE----NPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRS 512
+VKHA IIH T E + L +LV A ++ PR + R + RQ +DV L++S
Sbjct: 446 LVKHADLIIHKATQEHLISHVLPMLVRAYDDTDPRLQEEVLRRTVPLSRQ-LDVKLLKQS 504
Query: 513 TKQSGFCAQVHVRLHSEILKQSQSVLQMN*LMQLRVHLTPTHQKEG 650
V R+H LK + + +++N L L L P+ KEG
Sbjct: 505 ---------VLPRVHGLALKTTVAAVRVNALRCLG-DLVPSLDKEG 540
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 53 T*PRQAAWLWKPCLYHKPPTF 115
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 82 ETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFVT 261
+ +SLP ++ E+ GR +D Q+ Q + KEK +P A R + K T
Sbjct: 723 QLLSLPSSSGANELIPKGRHDFWDNQLEIDHGQTSVPEKEKDLVEVPQEAERVSDKSVGT 782
Query: 262 PSAQSWSAL 288
S++S AL
Sbjct: 783 ESSRSDIAL 791
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3
Query: 171 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWY 19
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWH 470
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 438 EDSTRIGRAGTVRRQAVDVSPLRRSTKQSG 527
E GRAG RRQAVD RR Q G
Sbjct: 102 EPDGEAGRAGLRRRQAVDEVAARREEPQGG 131
>06_03_0142 + 17208577-17209485,17209578-17210195
Length = 508
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 307 CIIREFVRRSTIGHWVLRNACVHTCQL 227
CII+E +R T G +VL C CQ+
Sbjct: 361 CIIKETLRLHTPGPFVLPRKCQEQCQI 387
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 52 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 222
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +3
Query: 285 LTNSLMMHGR-NNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 461
+T +L++ G +G+ A R+VK E ++ E +++ G +D+TR+
Sbjct: 289 VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRV-- 346
Query: 462 AGTVRRQAVDVSPLRRSTKQSGFCAQVHVRLHSEILKQSQSV 587
+R + V+ +T +G C + ++L++ + V
Sbjct: 347 RNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 276 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 386
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 207 VLLFNGNVVLQRHIRDLHIVATPSAEK 127
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,312
Number of Sequences: 37544
Number of extensions: 373819
Number of successful extensions: 947
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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