Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20828
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 167 5e-42
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 30 1.9
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.3
SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14) 28 5.8
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42) 28 7.6
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 167 bits (407), Expect = 5e-42
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRR 214
Score = 91.1 bits (216), Expect = 7e-19
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYA K++
Sbjct: 212 LRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKK 261
Score = 86.6 bits (205), Expect = 2e-17
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +1
Query: 73 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 252
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128
Query: 253 F 255
F
Sbjct: 129 F 129
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 73 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 177
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = -2
Query: 619 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDRRKGETSTA*RRTVPARPILVES 440
T C + C + +C + SEC T CA +C R T + R R ES
Sbjct: 94 TRECESTSECESTTECESTSECESTSECASTTECESTRECESTKESVRVRQSVRVRQSES 153
Query: 439 SRGPELIMAVTST 401
+R E ST
Sbjct: 154 TRECESTSECEST 166
>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 526 PDCLVDRRKGETSTA*R--RTVPARPILVESSRGPELIMA 413
PD VD +K + R R VPA+ + + S+RGP++I A
Sbjct: 404 PDLRVDPQKSDAQEVTRDLRVVPAQSVPLLSTRGPQVIPA 443
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 610 CIN*FICNTLCDCFNISECSLTCTC 536
C+N +C+ C + SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188
>SB_46571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +3
Query: 369 IHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRSTKQSGFCAQVHV 548
I + TGE + +L +AII +G E R T + LR ++S C ++
Sbjct: 117 IDVATGEGMVFLLASAIIRAGKEEILLRYFGGST--------TSLRSIEEESASCVSLND 168
Query: 549 RLHSEILKQSQSVL 590
+ EIL+ SQ L
Sbjct: 169 TVSQEILRASQQFL 182
>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
Length = 556
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 112 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 243
IPE L C DV + LQ+++ + +KY YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 22 PIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKL--FGRWSCYDVQVSDMSLQDYISV 195
P E+ WNDD E V+ +SLP+ + E+ L + +S +VQ+ Q ++
Sbjct: 210 PHFVEKEWNDDTYE---VMRGMISLPEVIAVGEVGLDFYRNYSKKEVQIEAFEKQVELAC 266
Query: 196 KEKYAKYLPHSAGRYAHKRFV 258
E L H R +H +FV
Sbjct: 267 -EFQKPLLAHE--RSSHIKFV 284
>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
Length = 603
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 293 VCKALHDWALGVTKRLCAYLPAE*GKYFAYFSLTEM*SCRDISETC 156
VC+ H+W +G + L Y + K F FS T+M SC ++ C
Sbjct: 307 VCRNRHNWDIGASM-LLRYPLDQSNKSF--FSWTDMASCDQLATAC 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,919
Number of Sequences: 59808
Number of extensions: 457442
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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