Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20828
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 171 1e-42
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 170 4e-42
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 170 4e-42
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 170 4e-42
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 170 4e-42
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 91 4e-18
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 87 4e-17
M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein. 30 6.3
M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte a... 30 6.3
BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibilit... 30 6.3
BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein. 30 6.3
AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen pr... 30 6.3
AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen pr... 30 6.3
AY804141-1|AAW78746.1| 258|Homo sapiens MHC class II antigen pr... 30 8.3
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 8.3
AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens ... 30 8.3
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 8.3
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 171 bits (417), Expect = 1e-42
Identities = 82/87 (94%), Positives = 83/87 (95%)
Frame = +3
Query: 249 AFRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINS 428
AFR QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINS
Sbjct: 60 AFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 429 GPREDSTRIGRAGTVRRQAVDVSPLRR 509
GPREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRR 146
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193
Score = 88.2 bits (209), Expect = 2e-17
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +1
Query: 97 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA F
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAF 61
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 4e-42
Identities = 81/86 (94%), Positives = 82/86 (95%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRR 146
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193
Score = 92.7 bits (220), Expect = 1e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = +1
Query: 97 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRF
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRF 61
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 4e-42
Identities = 81/86 (94%), Positives = 82/86 (95%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRR 146
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193
Score = 92.7 bits (220), Expect = 1e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = +1
Query: 97 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRF
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRF 61
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 170 bits (413), Expect = 4e-42
Identities = 81/86 (94%), Positives = 82/86 (95%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRR 146
Score = 92.7 bits (220), Expect = 1e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = +1
Query: 97 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRF
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRF 61
Score = 92.7 bits (220), Expect = 1e-18
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSN YA K+R
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKR 193
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 170 bits (413), Expect = 4e-42
Identities = 81/86 (94%), Positives = 82/86 (95%)
Frame = +3
Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
FR QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
PREDSTRIGRAGTVRRQAVDVSPLRR
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRR 146
Score = 93.9 bits (223), Expect = 4e-19
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = +2
Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
L VNQAIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 144 LRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 193
Score = 92.7 bits (220), Expect = 1e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = +1
Query: 97 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRF
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRF 61
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 90.6 bits (215), Expect = 4e-18
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +3
Query: 264 QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 416
QCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 2 QCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 87.4 bits (207), Expect = 4e-17
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +2
Query: 518 AIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
AIWLLCTGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 44
>M83664-1|AAA59837.1| 258|Homo sapiens HLA-DPB1 protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>M28200-1|AAA53195.1| 258|Homo sapiens MHC class II lymphocyte
antigen beta chain protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>BT019780-1|AAV38583.1| 258|Homo sapiens major histocompatibility
complex, class II, DP beta 1 protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>BC013184-1|AAH13184.1| 258|Homo sapiens HLA-DPB1 protein protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>AY804143-1|AAW78748.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>AY804133-1|AAW78738.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 30.3 bits (65), Expect = 6.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +E+YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNREEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSA 285
A P+A+ W++
Sbjct: 73 EFRAVTELGRPAAEYWNS 90
>AY804141-1|AAW78746.1| 258|Homo sapiens MHC class II antigen
protein.
Length = 258
Score = 29.9 bits (64), Expect = 8.3
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 55 VAEAGSVVVETMSLPQAADIPEIKLF-GRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSA 231
VA ++V S+ Q PE ++ GR CY + L+ YI +++YA++
Sbjct: 13 VALTALLMVLLTSVVQGRATPENYVYQGRQECYAFNGTQRFLERYIYNRQEYARFDSDVG 72
Query: 232 GRYAHKRFVTPSAQSWSALQTL 297
A P+A+ W++ + L
Sbjct: 73 EFRAVTELGRPAAEYWNSQKDL 94
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 152 MCKSLICLCRTTFPLKRSTQNIYLIQLA 235
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK094875-1|BAC04446.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ37556 fis, clone BRCAN2028545. ).
Length = 149
Score = 29.9 bits (64), Expect = 8.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -2
Query: 637 CVGVR*TL---SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLV 512
CV VR ++ C ++C +C C + C C CA C+V
Sbjct: 90 CVYVRMSVHECKCACVYVCKRVCTCACVCMCVQVCMCASVHMCIV 134
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 152 MCKSLICLCRTTFPLKRSTQNIYLIQLA 235
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,605,362
Number of Sequences: 237096
Number of extensions: 1978669
Number of successful extensions: 3992
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3985
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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