Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20828
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   161   4e-40
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    28   5.0  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    28   5.0  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    27   8.8  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    27   8.8  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    27   8.8  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  161 bits (391), Expect = 4e-40
 Identities = 76/86 (88%), Positives = 80/86 (93%)
 Frame = +3

Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
           FR   CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSG
Sbjct: 67  FRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSG 126

Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
           PREDSTRIGRAGTVRRQAVDV+PLRR
Sbjct: 127 PREDSTRIGRAGTVRRQAVDVAPLRR 152



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/50 (86%), Positives = 47/50 (94%)
 Frame = +2

Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
           L  VNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 150 LRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKK 199



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 33/51 (64%), Positives = 39/51 (76%)
 Frame = +1

Query: 103 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 255
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RF
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRF 67


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 426 SGPREDSTRIGRAGTVRRQA-VDVSPLRRSTKQSGFCAQVHVRLHSEILKQSQSVLQ 593
           S P + S + G + TV   +  + + +R S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTYIRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 234 QVCTQAFRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFE 365
           Q+C + ++   C +  +  N+++     +GK ++A  I+K  FE
Sbjct: 290 QLCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFE 333


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 234 QVCTQAFRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFE 365
           Q+C + ++   C +  +  N+++     +GK ++A  I+K  FE
Sbjct: 290 QLCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFE 333


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 613 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDRRKG 497
           SC   F+ N    C N +EC  T +  + P  LVD R G
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTG 238


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +1

Query: 130 FGRWSCYDVQVSDMS-LQDYISVKEKYAKYL------PHSAGRYAHKRFVTPSAQSWS 282
           F + S  D+  SD   +QD I   E   KYL      PH AG  A+K+     A +WS
Sbjct: 33  FNKVSIDDIHKSDAGVIQDNIKT-ENIKKYLRIFTKDPHVAGTEANKKVAYEIANAWS 89


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +1

Query: 130 FGRWSCYDVQVSDMS-LQDYISVKEKYAKYL------PHSAGRYAHKRFVTPSAQSWS 282
           F + S  D+  SD   +QD I   E   KYL      PH AG  A+K+     A +WS
Sbjct: 33  FNKVSIDDIHKSDAGVIQDNIKT-ENIKKYLRIFTKDPHVAGTEANKKVAYEIANAWS 89


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +1

Query: 130 FGRWSCYDVQVSDMS-LQDYISVKEKYAKYL------PHSAGRYAHKRFVTPSAQSWS 282
           F + S  D+  SD   +QD I   E   KYL      PH AG  A+K+     A +WS
Sbjct: 52  FNKVSIDDIHKSDAGVIQDNIKT-ENIKKYLRIFTKDPHVAGTEANKKVAYEIANAWS 108


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 328 FLPLFRPCIIREFVRRSTIGHWVLRNACVHTCQLNEVNILRTS 200
           +  +FR    RE + R ++G   L N    T Q N+ N LRT+
Sbjct: 180 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 222


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 328 FLPLFRPCIIREFVRRSTIGHWVLRNACVHTCQLNEVNILRTS 200
           +  +FR    RE + R ++G   L N    T Q N+ N LRT+
Sbjct: 287 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 329


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 328 FLPLFRPCIIREFVRRSTIGHWVLRNACVHTCQLNEVNILRTS 200
           +  +FR    RE + R ++G   L N    T Q N+ N LRT+
Sbjct: 259 YFKIFRVASEREALMRQSVGTCRLSNRLTKTQQKNQRNNLRTA 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,111
Number of Sequences: 27780
Number of extensions: 331332
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)