Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20828
(653 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.48
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 2.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 2.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 2.6
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 22 6.0
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 7.9
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 7.9
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 7.9
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 7.9
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 7.9
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.9
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.4 bits (53), Expect = 0.48
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = -2
Query: 592 CNTLCDCFNISECSLTCTCAQKPDCLVDR 506
C LC C + C TC C DR
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYNDR 771
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.0 bits (47), Expect = 2.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 313 RPCIIREFVRRSTIGHWVL 257
+ +++E +R+ GHWV+
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 2.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 313 RPCIIREFVRRSTIGHWVL 257
+ +++E +R+ GHWV+
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 2.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 313 RPCIIREFVRRSTIGHWVL 257
+ +++E +R+ GHWV+
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.8 bits (44), Expect = 6.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 175 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 80
+ Y+RL H N I ++ F RL T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 345 IVKHAFEIIHLLTGENPLQVLVTAII 422
+++HAFEI +L P+ +++ I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 255 RNTQCPIVERLTNSLMMHGRNNGKKLMAVRI 347
R+ + I+ L+N + + NN KKL I
Sbjct: 75 RSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 255 RNTQCPIVERLTNSLMMHGRNNGKKLMAVRI 347
R+ + I+ L+N + + NN KKL I
Sbjct: 75 RSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 255 RNTQCPIVERLTNSLMMHGRNNGKKLMAVRI 347
R+ + I+ L+N + + NN KKL I
Sbjct: 75 RSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 255 RNTQCPIVERLTNSLMMHGRNNGKKLMAVRI 347
R+ + I+ L+N + + NN KKL I
Sbjct: 75 RSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 255 RNTQCPIVERLTNSLMMHGRNNGKKLMAVRI 347
R+ + I+ L+N + + NN KKL I
Sbjct: 308 RSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,731
Number of Sequences: 438
Number of extensions: 3589
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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