Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20828
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   153   7e-38
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   153   7e-38
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   153   7e-38
At2g45590.1 68415.m05669 protein kinase family protein contains ...    30   1.5  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    28   6.2  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   8.2  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   8.2  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   8.2  
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    27   8.2  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (372), Expect = 7e-38
 Identities = 71/86 (82%), Positives = 78/86 (90%)
 Frame = +3

Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
           FR  QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSG
Sbjct: 64  FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSG 123

Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
           PRED+TRIG AG VRRQAVD+SPLRR
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRR 149



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 41/50 (82%), Positives = 46/50 (92%)
 Frame = +2

Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
           L  VNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 147 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
 Frame = +1

Query: 100 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRF 255
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRF
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRF 64


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  153 bits (372), Expect = 7e-38
 Identities = 71/86 (82%), Positives = 78/86 (90%)
 Frame = +3

Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
           FR  QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSG
Sbjct: 64  FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSG 123

Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
           PRED+TRIG AG VRRQAVD+SPLRR
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRR 149



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 41/50 (82%), Positives = 46/50 (92%)
 Frame = +2

Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
           L  VNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 147 LRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
 Frame = +1

Query: 100 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRF 255
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRF
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRF 64


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  153 bits (372), Expect = 7e-38
 Identities = 71/86 (82%), Positives = 78/86 (90%)
 Frame = +3

Query: 252 FRNTQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 431
           FR  QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSG
Sbjct: 64  FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSG 123

Query: 432 PREDSTRIGRAGTVRRQAVDVSPLRR 509
           PRED+TRIG AG VRRQAVD+SPLRR
Sbjct: 124 PREDATRIGSAGVVRRQAVDISPLRR 149



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/50 (84%), Positives = 46/50 (92%)
 Frame = +2

Query: 500 LAPVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYASKRR 649
           L  VNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYA K++
Sbjct: 147 LRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
 Frame = +1

Query: 118 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRF 255
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRF
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRF 64


>At2g45590.1 68415.m05669 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 683

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 146 ATMCKSLICLCRTTFPLKRSTQNIYLIQLAGM----HTSVS*HPVPNRGAPYKLSNDAR 310
           A +C ++  LC    P+KR T    +  L+G+    H      P P  G P+K    AR
Sbjct: 625 AVLCITIALLCLQRSPVKRPTMKEIVEMLSGVSEPPHLPFEFSPSPPMGFPFKSRKKAR 683


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 122  SSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVS*HPVP 271
            S +  D +   C++L     +T+ L  ++Q   L+Q A +  S+   PVP
Sbjct: 1151 SKWLVDTLQNYCRALDYFVNSTYLLSPTSQTQLLVQPASVDLSIGLFPVP 1200


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  YHKPPTFLKSSFSADGVATMCKSLI 169
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  AWLWKPCLYHKPPTFLKSSFSA 136
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 122  SSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVS*HPVP 271
            S +  D +   C++L     +T+ L  ++Q   L+Q A +  S+   PVP
Sbjct: 1398 SKWLVDTLQNYCRALDYFVNSTYLLSPTSQTQLLVQPASVGLSIGLFPVP 1447


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 59   PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 232
            P +  W+ WK   L + PP  L       GV  + +S +   +T  P KR  +N+ ++ L
Sbjct: 795  PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850

Query: 233  AGMHTSVS*HPVPNRGAPYKL 295
             G H   +   + N  A  KL
Sbjct: 851  RGCHGLEAIPDLSNHNALEKL 871


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,714
Number of Sequences: 28952
Number of extensions: 298965
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)