Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20825
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    69   5e-13
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    27   2.0  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.6  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   4.6  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = +2

Query: 491 KSPNRLKNKIKK-DVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLESRLELIAQQLL 667
           K+   LK+K    D  L  +T++FL+    GG+ LV   G+I++ NTL +RLE++ ++ L
Sbjct: 150 KATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEAL 209

Query: 668 PEIRNALFGRNPNR 709
           PEIR  LFG NPNR
Sbjct: 210 PEIRRLLFGENPNR 223



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 24/79 (30%), Positives = 46/79 (58%)
 Frame = +3

Query: 261 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 440
           SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L EP  
Sbjct: 73  SNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVG 132

Query: 441 TIRVRQTDKALVESLLGKA 497
            +  RQ D  +V++ + KA
Sbjct: 133 IVYSRQRDAEIVKAAIPKA 151


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 599 LQPARFHHRCRA-TKSSRCRLSTQHPS*SYSLVCLGFSEQGLHQSLVGLTDADGDSGFHE 423
           +     HH  +A +K  +C +S  +PS S  + CL  S     + + GLT   G + F++
Sbjct: 1   MDSGEMHHPYQAFSKVGKCEISQTNPSFSSGMRCLVRSADIQFKGICGLT--RGFASFNK 58

Query: 422 LEESLHNKCDQQ 387
             +++  K  Q+
Sbjct: 59  PPQTITEKIVQK 70


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 309 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 434
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 634 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 509
           LQ V+ +  SP    L     VG+ +V+  DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,673
Number of Sequences: 5004
Number of extensions: 46082
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)