Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20825
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 61 1e-09
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 54 8e-08
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 54 8e-08
09_02_0115 + 4413714-4414475 32 0.51
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 31 0.68
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 2.7
12_02_0312 + 17395716-17398112 29 3.6
06_02_0105 - 11893666-11895483,11895661-11896422 29 3.6
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 4.8
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 4.8
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 4.8
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 6.3
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.3
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 28 6.3
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 28 8.4
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 60.9 bits (141), Expect = 1e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +3
Query: 261 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 440
S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP V
Sbjct: 71 SMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAV 130
Query: 441 TIRVRQTDKALVESLLGKAQTD 506
+R R+ D VES+L A+ +
Sbjct: 131 LLRCRKEDHHHVESVLHSAKNE 152
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 578 GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 697
GG+ L + G+I NTL++RLE++ ++ LPEIR LFG+
Sbjct: 188 GGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQ 227
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 52 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 204
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKI 51
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 54.4 bits (125), Expect = 8e-08
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Frame = +3
Query: 198 QDYGIL*KEGEAG*TSEEDQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL 377
QDY K+ + G + + S LN AR+KVL+ ++ V + ++A K L V KD
Sbjct: 53 QDYERKAKQVDVG---RKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATA 109
Query: 378 YSELLVTLIV-----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTD 506
Y ++L LIV Q+L +L EP+V +R R+ D+ VES+L A+ +
Sbjct: 110 YRKVLKGLIVQRKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKE 163
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 566 PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 697
P GG+ + + G+I NTL++R+E+ +Q LPEIR LF +
Sbjct: 195 PFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 238
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 52 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 204
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRI 51
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 54.4 bits (125), Expect = 8e-08
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Frame = +3
Query: 261 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ---------- 410
S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 72 SKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQ 131
Query: 411 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTD 506
+L +L EP V +R R+ D+ LVES+L A+ +
Sbjct: 132 SLLRLKEPAVILRCRKEDRELVESVLESAKNE 163
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 566 PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPE 673
P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 195 PSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 52 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 204
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRI 52
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 380 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 478
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 31.5 bits (68), Expect = 0.68
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +1
Query: 460 PTRLWWSPCSEKPKQTKE*DQEGCCVESRHRELFVARHLWWNRAGCSQG 606
P L SPC + T DQEG C S R + A NRAGCS G
Sbjct: 221 PRCLMNSPCDTEQNGTISHDQEGECSTSTLRPMVEA----GNRAGCSAG 265
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 240 TSEEDQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 413
T D N + +RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 814 TGTNDLIDNAV-MSRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 246 EEDQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 395
+E + +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 381 QEVKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 246 EEDQSSNMLNQARLKVLKVRE--DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQAL 416
E D+S ++ +A+ K+ K +E DH ++ LD R+ V K+ + E + L + AL
Sbjct: 607 EADESKSIAREAQEKLRKAKEDMDHAKSCLDTMEFRIQAVLKEMEATKESM-RLAIDAL 664
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 702 GLRPKRALRISGSSCWAISSKRDSRVLLILIRPLAATSSI--PPQVSGDKK 556
G+ + I S C A+ SK D +LIL P+A + ++ P ++ G +K
Sbjct: 332 GMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRK 382
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 398 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 499
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 652 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 512
++L+ + DL GC+ DS G+G Q L + QH + ++
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESIL 156
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 508
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 398 TYCAGSLPAHGTHCHHPRPSNRQGSGG 478
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 389 AGHTYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLKNKIKK 526
A H GSLP HG+ +R+ GVP + P +K +K+
Sbjct: 845 ARHYLEEGSLPDHGSSSASAAGGSRRNDRGVPVKPLP-EIKENVKQ 889
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +2
Query: 359 AKGHQTVLRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLKNKIKKDVVL 538
+KG V+RA Y G HG H + + S + GV + P R +
Sbjct: 115 SKGSHQVMRAEWEKYLLGKAELHGLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSIS 174
Query: 539 KVDTENFLS 565
KV+ L+
Sbjct: 175 KVEANALLA 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,790
Number of Sequences: 37544
Number of extensions: 367200
Number of successful extensions: 1125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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