Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20825
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           51   1e-06
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)         32   0.52 
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.52 
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   6.5  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +3

Query: 297 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 476
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 477 E 479
           +
Sbjct: 128 K 128



 Score = 41.1 bits (92), Expect(2) = 2e-06
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +2

Query: 578 GGIELVAARGRIKISNTLESRLELIAQQ 661
           GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261



 Score = 28.7 bits (61), Expect(2) = 2e-06
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 509 KNKIKKDVVLKVDTENFLSPD 571
           K + KK++ L VD +NFL PD
Sbjct: 183 KKQTKKEIELTVDEQNFLGPD 203


>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
          Length = 359

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 246 EEDQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 386
           E+D   N  N A   + KV E+ V + L++A+K LAE    T L +E
Sbjct: 44  EDDPEGNTKNNALDDMPKVTEEMVADALEKAKKSLAEEEPGTPLDTE 90


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 282 RLKVLKVREDHVRNVLDEARKRLAEV 359
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 285  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 395
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 527 DVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 637
           D+V++ D  N L PD+ G IEL   R  +  SN ++S
Sbjct: 56  DLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 276  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 386
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,958
Number of Sequences: 59808
Number of extensions: 382661
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)