Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20825
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -1

Query: 169 FRC*TPPRPSHRFLRP----FRWPL 107
           FRC  PP P  RF+ P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 354 EVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQ 500
           E+ K  K   E ++ +I +A    +EPT    +RQT +  V  +L  A+
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 210


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +2

Query: 503 RLKNKIKKDVVLKVDT 550
           R KN++++++ +K+DT
Sbjct: 69  RFKNELERNITIKLDT 84


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 604 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 524
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 604 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 524
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -1

Query: 661 LLGDQLQARLQSVAD--LDT--SPGCNQL 587
           LL DQLQ R QSV    L T  S  CN++
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKI 126


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -1

Query: 661 LLGDQLQARLQSVAD--LDT--SPGCNQL 587
           LL DQLQ R QSV    L T  S  CN++
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKI 126


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 246 EEDQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 410
           ++  S +  NQ R       +DH     +  RK+L +  +  +L  +L + +I Q
Sbjct: 108 QDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQ--QLQEQLQLNVIQQ 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,359
Number of Sequences: 438
Number of extensions: 2919
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)