BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20823 (671 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 108 8e-25 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 108 8e-25 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 88 1e-18 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 61 1e-10 SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 54 2e-08 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 52 6e-08 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 49 7e-07 SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.009 SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.021 SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.021 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.021 SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 29 0.61 SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.4 SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.4 SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 27 2.5 SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo... 27 3.3 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.3 SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.5 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.5 SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.5 SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 9.9 SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.9 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 9.9 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 108 bits (259), Expect = 8e-25 Identities = 56/85 (65%), Positives = 65/85 (76%) Frame = +1 Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 435 TIKSTAIS+F E+ + D+ + P FL+NLIDSPGHVDFSSEVTAALRVTDG Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124 Query: 436 ALVVVERTSGVCVQTETVLRQAIAD 510 ALVVV+ GVCVQTETVLRQA+ + Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGE 149 Score = 102 bits (244), Expect = 5e-23 Identities = 47/66 (71%), Positives = 55/66 (83%) Frame = +2 Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 232 MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60 Query: 233 KDEQDR 250 DEQ+R Sbjct: 61 ADEQER 66 Score = 46.8 bits (106), Expect = 3e-06 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 644 RI+P++ +NK+DR YQ F R+VE+VNV+I+TY D Sbjct: 150 RIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYD 194 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 108 bits (259), Expect = 8e-25 Identities = 56/85 (65%), Positives = 65/85 (76%) Frame = +1 Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 435 TIKSTAIS+F E+ + D+ + P FL+NLIDSPGHVDFSSEVTAALRVTDG Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSPGHVDFSSEVTAALRVTDG 124 Query: 436 ALVVVERTSGVCVQTETVLRQAIAD 510 ALVVV+ GVCVQTETVLRQA+ + Sbjct: 125 ALVVVDTIEGVCVQTETVLRQALGE 149 Score = 102 bits (244), Expect = 5e-23 Identities = 47/66 (71%), Positives = 55/66 (83%) Frame = +2 Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 232 MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60 Query: 233 KDEQDR 250 DEQ+R Sbjct: 61 ADEQER 66 Score = 46.8 bits (106), Expect = 3e-06 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 644 RI+P++ +NK+DR YQ F R+VE+VNV+I+TY D Sbjct: 150 RIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYD 194 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 87.8 bits (208), Expect = 1e-18 Identities = 48/85 (56%), Positives = 63/85 (74%) Frame = +1 Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 435 T+KS+AIS+FF++ I+ D+ ++ EK +LINLIDSPGHVDFSSEV++A R+ DG Sbjct: 69 TMKSSAISLFFKV-------ISQNDE-KRVEKDYLINLIDSPGHVDFSSEVSSASRLCDG 120 Query: 436 ALVVVERTSGVCVQTETVLRQAIAD 510 A V+V+ GVC QT TVLRQA D Sbjct: 121 AFVLVDAVEGVCSQTITVLRQAWID 145 Score = 63.3 bits (147), Expect = 3e-11 Identities = 28/60 (46%), Positives = 41/60 (68%) Frame = +2 Query: 71 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 250 +++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66 Score = 33.5 bits (73), Expect = 0.028 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +3 Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATY 638 RIK IL +NKMDR + R+VE VN +I T+ Sbjct: 146 RIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTF 188 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 61.3 bits (142), Expect = 1e-10 Identities = 32/59 (54%), Positives = 40/59 (67%) Frame = +1 Query: 322 NPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQ 498 N Q EK + IN+ID+PGH+DF+ EV ALRV DGA++V+ SGV QT TV RQ Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQ 192 Score = 35.1 bits (77), Expect = 0.009 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +2 Query: 59 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 190 N + E DKKR IRN+ + AH+D GK+T T+ ++ G I Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86 >SPBC660.10 |||translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 813 Score = 53.6 bits (123), Expect = 2e-08 Identities = 23/47 (48%), Positives = 35/47 (74%) Frame = +1 Query: 361 INLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA 501 INLID+PGH DF+ EV ++ V DGA+ +++ ++GV QT+ V +QA Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQA 141 Score = 34.7 bits (76), Expect = 0.012 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = +2 Query: 104 NIRNMSVIAHVDHGKSTLTDSLVSKAG 184 +IRN+ +IAH+D GK+TLT+ ++ G Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 52.4 bits (120), Expect = 6e-08 Identities = 22/52 (42%), Positives = 33/52 (63%) Frame = +1 Query: 349 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAI 504 K F ID+PGHVDF EV A + ++DG ++VV+ GV + T +++ AI Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAI 258 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 48.8 bits (111), Expect = 7e-07 Identities = 19/44 (43%), Positives = 32/44 (72%) Frame = +1 Query: 349 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480 + +L+NLID+PGHVDF +EV +L +G +++V+ + G+ QT Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQT 165 Score = 44.4 bits (100), Expect = 2e-05 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = +2 Query: 77 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCT 256 +RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D K E +R Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLD--KLEVERRR 104 Query: 257 PLNLRPSLCS 286 + ++ CS Sbjct: 105 GITVKAQTCS 114 >SPBC9B6.04c |tuf1||mitochondrial translation elongation factor EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 35.1 bits (77), Expect = 0.009 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 370 IDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480 +D PGH D+ + DGA++VV T G QT Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQT 157 Score = 30.3 bits (65), Expect = 0.26 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +2 Query: 95 KKRNIRNMSVIAHVDHGKSTLTDSL 169 KK ++ N+ I HVDHGK+TLT ++ Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 33.9 bits (74), Expect = 0.021 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184 M K++ N+ VI HVD GKST T L+ K G Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 33.9 bits (74), Expect = 0.021 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184 M K++ N+ VI HVD GKST T L+ K G Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 33.9 bits (74), Expect = 0.021 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184 M K++ N+ VI HVD GKST T L+ K G Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32 >SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1283 Score = 29.1 bits (62), Expect = 0.61 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +1 Query: 382 GHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIADASSL 522 G V F S +TA + GA++VVE T+G TET++ +I S++ Sbjct: 780 GSVSFMSTITAH-DTSSGAVIVVEPTAGTV--TETIVSGSIPFTSTI 823 >SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 27.9 bits (59), Expect = 1.4 Identities = 20/87 (22%), Positives = 40/87 (45%) Frame = -1 Query: 527 QNRLDASAIA*RSTVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPF 348 Q + +S+++ ++ S + +TTT +PS + S++ +S S+ S Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183 Query: 347 SLFSHWSGFVMNTKSFSSSSKNIEMAV 267 S S S ++ S SSSS + + + Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPI 210 >SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual Length = 686 Score = 27.9 bits (59), Expect = 1.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 217 ++++ HVDHGK+TL D+ K+ I + G T+ Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206 Score = 27.9 bits (59), Expect = 1.4 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +1 Query: 361 INLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLR 495 I +D+PGH+ F + + D ++VV GV QT ++ Sbjct: 222 ITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIK 266 >SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonuclease Cce1|Schizosaccharomyces pombe|chr 1|||Manual Length = 258 Score = 27.1 bits (57), Expect = 2.5 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -1 Query: 353 PFSLFSHWSGFVMNTK-SFSSSSKNIEMAVDLM 258 P S +S+W+ V+NTK SFS ++M +L+ Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199 >SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 316 Score = 26.6 bits (56), Expect = 3.3 Identities = 27/102 (26%), Positives = 50/102 (49%) Frame = +1 Query: 289 ELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGV 468 E+++ + F NP C S G + +LI+ ++ +S+ A + G LV +E+ + Sbjct: 3 EMDKSNDFFEENP--CPNS-LGDVSSLIEDFINLQSNSQ-NIAFVTSGGTLVPLEQNTVR 58 Query: 469 CVQTETVLRQAIADASSLFCS*TKWTVLFLSSNLKLKNYTRR 594 + + + A A FC + ++V+FL N L +TRR Sbjct: 59 FIDNFSAGNRGAASAE-YFCK-SGYSVIFLYRNYSLMPFTRR 98 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 26.2 bits (55), Expect = 4.3 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGII 190 N+ I HVD GKSTL +++ G++ Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265 >SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 598 Score = 25.4 bits (53), Expect = 7.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 109 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 14 D P + +H D ++E H RW + +LLN++ Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 25.4 bits (53), Expect = 7.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 104 SASCPSSHGSRLP*NSPF*MVYDFCSIK 21 +ASCP SH L + PF + + C IK Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444 >SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 566 Score = 25.4 bits (53), Expect = 7.5 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 138 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 245 +T S T + P P S + REP P+S R+R+++ Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84 >SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 Query: 113 NMSVIAHVDHGKSTLTDSL 169 N+ I HV HGKST+ ++ Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43 >SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 592 Score = 25.0 bits (52), Expect = 9.9 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +2 Query: 32 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 190 K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 25.0 bits (52), Expect = 9.9 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +1 Query: 367 LIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLR 495 +ID+PGH F++ + + + A++V++ G+ QT +R Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIR 595 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,772,454 Number of Sequences: 5004 Number of extensions: 54903 Number of successful extensions: 200 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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