Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20823
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 129 2e-30
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 1e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 39 0.003
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.28
SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23) 32 0.37
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.64
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 31 0.64
SB_19536| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_8081| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_19832| Best HMM Match : NifT (HMM E-Value=7.9) 31 1.1
SB_10320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_2228| Best HMM Match : Pox_A32 (HMM E-Value=0.099) 30 1.5
SB_36494| Best HMM Match : DUF1103 (HMM E-Value=1.8) 30 1.5
SB_10305| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017) 29 3.4
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.4
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 28 6.0
SB_45383| Best HMM Match : HDV_ag (HMM E-Value=1.9) 28 6.0
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 129 bits (312), Expect = 2e-30
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 435
TIKSTAIS+++EL E D +IT P + E+GFLINLIDSPGHVDFSSEVTAALRVTDG
Sbjct: 68 TIKSTAISLYYELPESDFEYITQPK--DPKERGFLINLIDSPGHVDFSSEVTAALRVTDG 125
Query: 436 ALVVVERTSGVCVQTETVLRQAIAD 510
ALVVV+ SGVCVQTETVLRQAIA+
Sbjct: 126 ALVVVDCVSGVCVQTETVLRQAIAE 150
Score = 128 bits (309), Expect = 4e-30
Identities = 60/66 (90%), Positives = 63/66 (95%)
Frame = +2
Query: 56 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 235
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 236 DEQDRC 253
DEQDRC
Sbjct: 61 DEQDRC 66
Score = 71.7 bits (168), Expect = 5e-13
Identities = 32/54 (59%), Positives = 39/54 (72%)
Frame = +3
Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEVR 671
RIKP+LFMNKMDR YQTF RIVE++NVIIATY+D+ GPMG ++
Sbjct: 151 RIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIATYSDEDGPMGNIQ 204
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +1
Query: 259 IKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 438
IK A S F E+E + + + + + IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
Query: 439 LVVVERTSGVCVQTETVL 492
+VV++ GV QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 92 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 205
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 193
+RN S++AHVDHGKSTL D L+ G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 370 IDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
+ + GHVDFS EV+ +L G +++V+ GV QT
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQT 2027
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA 501
+ +V+ A+R+ DGALVVV+ GV QT VLRQA
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 55
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 403 EVTAALRVTDGALVVVERTSGVCVQTETVLRQA 501
+V+ A+R+ DGALVVV+ GV QT VLRQA
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQA 125
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 501 YCRRIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 635
+ I+P L +NK+DR + Q+I+E VN I T
Sbjct: 126 WLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 340 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAI 504
K G I ID+PGH F+S VTD ++VV GV QT +R A+
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 217
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 34.3 bits (75), Expect = 0.091
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 232
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 233 KDEQDRCTPLNLRPSLCSSSLKRKI 307
+ NL ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23)
Length = 227
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E VTD A V++ +GV + ++++ I+D SS + KW V LS ++
Sbjct: 155 STENKLVKTVTDSA-VIIGLAAGVGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 212
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 213 LKDYLETQKILPKAL 227
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 217
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 361 INLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIA 507
I +D+PGH F++ +VTD ++VV V QT+ + A A
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQA 188
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 349 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
K +I L+D+PGH DF + D A++VV+ +G
Sbjct: 11 KNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49
>SB_19536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +GV + ++++ I+D SS + KW V LS ++
Sbjct: 2 STENKLVKTITDSA-VIIGLAAGVGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 59
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 60 LKDYLETQKILPKPL 74
>SB_8081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E VTD A V+V +GV + ++++ I D SS + KW V LS ++
Sbjct: 2 STENKLVKTVTDSA-VIVGLAAGVGYVAKKAMKESFINDPSSSVTNYAKW-VAVLSGSMY 59
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 60 LKDYLETQKILPKPL 74
>SB_19832| Best HMM Match : NifT (HMM E-Value=7.9)
Length = 74
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +G+ + ++++ I+D SS + KW V LS ++
Sbjct: 2 STENKLVKTITDSA-VIIGLAAGMGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 59
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 60 LKDYLETQKILPKAL 74
>SB_10320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +G+ + ++++ I+D SS + KW V LS ++
Sbjct: 2 STENKLVKTITDSA-VIIGLAAGMGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 59
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 60 LKDYLETQKILPKPL 74
>SB_2228| Best HMM Match : Pox_A32 (HMM E-Value=0.099)
Length = 771
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +G+ + ++++ I+D SS + KW V LS ++
Sbjct: 699 STENKLVKTITDSA-VIIGLAAGMGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 756
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 757 LKDYLETQKILPKPL 771
>SB_36494| Best HMM Match : DUF1103 (HMM E-Value=1.8)
Length = 353
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +G+ + ++++ I+D SS + KW V LS ++
Sbjct: 281 STENKLVKTITDSA-VIIGLAAGMGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 338
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 339 LKDYLETQKILPKPL 353
>SB_10305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 397 SSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA-IADASSLFCS*TKWTVLFLSSNLK 573
S+E +TD A V++ +G+ + ++++ I+D SS + KW V LS ++
Sbjct: 2 STENKLVKTITDSA-VIIGLAAGMGYVAKKAMKESFISDPSSSVTNYAKW-VAVLSGSMY 59
Query: 574 LKNYTRRSSVL*KML 618
LK+Y +L K L
Sbjct: 60 LKDYLETQKILPKPL 74
>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
Length = 280
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = -1
Query: 494 RSTVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSHWSGFVM 315
R+ S HT + T V + P L ++ + F HWS
Sbjct: 31 RAPRSCIRHTTAEELWEREYNNFTDEHTVRKPSNTVFPANMRSLFRRRY--FRHWS-IRK 87
Query: 314 NTKSFSSSSKNIEMAVDLMVCNG 246
+ + FSSSS+N+ D+++ G
Sbjct: 88 SMRCFSSSSRNVSKEFDVVIVGG 110
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 227 TRKDEQDRCTPLNLRPSLCSSSLKRKI*YSSQTLTNVKRVRK 352
TRK + P ++R S S +++ I S TL N K +RK
Sbjct: 11 TRKSKTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -1
Query: 527 QNRLDASAIA*RSTVSVCTHTPDVRSTTTR-APSVTRSAAVTSEEKSTCPGESIKLIKKP 351
QN L + ++C + +VRS + S+ + E P E ++
Sbjct: 667 QNSLSKHVLGLHMNKNICFSSKEVRSIQGEVSESLGLYVCIKCNEACESPSELETHLEAV 726
Query: 350 FSLFSHWSGFVMNTKSFSSSSKNIEMAVDLMVCNGLVRPYACQ 222
V NT + SS+K +A+ +M+C+G RPY CQ
Sbjct: 727 HKRPPSRRCDVCNT--YLSSTK--ALALHMMLCHGTWRPYQCQ 765
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 146 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLNL-RPSLCSSSLKR 301
K+ + D+LV GI+ R G +TD + +R T R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 351
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 367 LIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
+ID+PGH FS+ + + D A++VV+ G+ QT
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQT 719
>SB_45383| Best HMM Match : HDV_ag (HMM E-Value=1.9)
Length = 444
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -1
Query: 569 KLELKKSTVHFV-HEQNRLDASAIA*RSTVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEK 393
++EL+ S + V H +NR +T+++ T T +R TTT + ++ R + + +
Sbjct: 354 RMELRISKMSSVCHHRNRATTRITTTTATMTMTTTTATMRVTTTTSSALLRQQQIQVQYQ 413
Query: 392 STCPGESIKLIKKPFSLFSH 333
P + K + P + H
Sbjct: 414 ---PDQHQKYLTTPSAFLQH 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,402,161
Number of Sequences: 59808
Number of extensions: 430438
Number of successful extensions: 1386
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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