Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20823
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    29   0.13 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   1.2  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.9  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.6  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           23   8.8  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 88  DGQEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCESRR 210
           D   A   QH+  RP+RS + NP       GR H  C+SRR
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNP------AGRQHDRCDSRR 307


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 374 SIKLIKKPFSLFSHWSGFVMNTKSFSSSSKNIEMAVDL 261
           +++L+KKP SL S W       +       N ++A+ L
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLAIAL 193


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 167 LVSKAGIIAGARAGETRFTDTRKDEQDRCTPLNLRPSL 280
           +V + G++ G    ET     RK+  +R  PL  R  L
Sbjct: 804 MVLQEGVVEGGTKDETDMERERKEMVERSRPLRKRKRL 841


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 103 EYPQHVCDRPRRSRQVNPHGLVGFQG 180
           ++P HVC+R  R+  +N   +V   G
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHG 375


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKST-CPGES 372
           +TV+  T T    +TTT AP+ T + A      +T  PG++
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVAPGQTTTTTVAPGQT 74


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,358
Number of Sequences: 2352
Number of extensions: 13903
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)