Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20823
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 132 2e-31
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 132 2e-31
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 68 5e-12
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 68 5e-12
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 63 2e-10
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 63 2e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 62 3e-10
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 3e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.026
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.026
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.026
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 34 0.080
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 34 0.080
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.18
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 33 0.18
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 33 0.18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 33 0.18
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.24
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.24
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.24
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.24
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.24
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.32
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 32 0.43
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.56
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 30 1.3
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.0
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.0
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.0
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 4.0
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 29 4.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 9.2
U40061-5|AAY43979.1| 312|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 132 bits (319), Expect = 2e-31
Identities = 61/67 (91%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 232
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 233 KDEQDRC 253
KDEQ+RC
Sbjct: 61 KDEQERC 67
Score = 130 bits (313), Expect = 1e-30
Identities = 71/93 (76%), Positives = 77/93 (82%), Gaps = 8/93 (8%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCE------KSEK--GFLINLIDSPGHVDFSSEVT 411
TIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVT
Sbjct: 69 TIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128
Query: 412 AALRVTDGALVVVERTSGVCVQTETVLRQAIAD 510
AALRVTDGALVVV+ SGVCVQTETVLRQAIA+
Sbjct: 129 AALRVTDGALVVVDCVSGVCVQTETVLRQAIAE 161
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +3
Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEV 668
RIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG +
Sbjct: 162 RIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPI 214
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 132 bits (319), Expect = 2e-31
Identities = 61/67 (91%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 232
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 233 KDEQDRC 253
KDEQ+RC
Sbjct: 61 KDEQERC 67
Score = 127 bits (306), Expect = 8e-30
Identities = 70/93 (75%), Positives = 76/93 (81%), Gaps = 8/93 (8%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQCE------KSEK--GFLINLIDSPGHVDFSSEVT 411
TIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVT
Sbjct: 69 TIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVT 128
Query: 412 AALRVTDGALVVVERTSGVCVQTETVLRQAIAD 510
AAL VTDGALVVV+ SGVCVQTETVLRQAIA+
Sbjct: 129 AALGVTDGALVVVDCVSGVCVQTETVLRQAIAE 161
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +3
Query: 510 RIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYNDDGGPMGEV 668
RIKP+LFMNKMDR +QTFQRIVEN+NVIIATY DD GPMG +
Sbjct: 162 RIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIATYGDDDGPMGPI 214
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/55 (54%), Positives = 43/55 (78%)
Frame = +1
Query: 358 LINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIADASSL 522
LINLIDSPGHVDFS EVT+AL ++D AL++++ G+C QTE ++RQ I + ++
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAM 138
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +2
Query: 104 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 250
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTR 67
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/55 (54%), Positives = 43/55 (78%)
Frame = +1
Query: 358 LINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIADASSL 522
LINLIDSPGHVDFS EVT+AL ++D AL++++ G+C QTE ++RQ I + ++
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAM 138
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +2
Query: 104 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 250
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTR 67
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +1
Query: 337 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIAD 510
+ K +L+N+ID+PGHV+FS E+TA+ R+ DG +V+V+ GV + TE +R AI +
Sbjct: 195 DSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQE 252
Score = 34.7 bits (76), Expect = 0.061
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 86 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCTPL 262
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 263 NLRP 274
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +1
Query: 337 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAIAD 510
+ K +L+N+ID+PGHV+FS E+TA+ R+ DG +V+V+ GV + TE +R AI +
Sbjct: 70 DSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQE 127
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCTPLN 265
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 266 LRP 274
+P
Sbjct: 61 SQP 63
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +1
Query: 253 HTIKSTAISMFFELEEKDLVFITNPDQCEKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 432
H K ++ F ++E + + + + KG INLID+PGHVDF EV +RV D
Sbjct: 57 HVDKGNTVTDFLDIERERGITVQSA-AVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLD 115
Query: 433 GALVVVERTSGVCVQTETVLRQA 501
G +VV++ ++GV QT TV RQ+
Sbjct: 116 GIVVVIDGSAGVQPQTLTVWRQS 138
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGII 190
+RN+ VIAHVD GK+T+T+ L+ AG I
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAI 52
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +1
Query: 349 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
+G+L+NLID+PGHVDFS+EV+ +L V DG L++V GV QT
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQT 143
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 250
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERER 86
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +1
Query: 352 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQ 498
G IN+ID+PGHVDF+ EV ALRV DGA++V+ GV QT TV RQ
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQ 159
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGII 190
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLN 265
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 370 IDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
ID PGH D+ + +GA++VV T G QT
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 153
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLN 265
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 370 IDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
ID PGH D+ + +GA++VV T G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLN 265
N+ I HVDHGK+TLT ++ GA+ + D +E+ R +N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 370 IDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
ID PGH D+ + +GA++VV T G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 361 INLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
I L+D+PGH DF S + D A++VV T+G
Sbjct: 250 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 101 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 190
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 361 INLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
I L+D+PGH DF S + D A++VV T+G
Sbjct: 268 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 101 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 190
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 343 SEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQT 480
S G + LID PGH V AA V D A+V+++ +G+ QT
Sbjct: 68 SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 247
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLNLRPSLCSSS 292
N+ I H+DHGK+TLT ++ A+ + D K+E+ R +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 293 LKR 301
L+R
Sbjct: 107 LRR 109
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 373 DSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTE 483
D PGH DF + D A++V+ T GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 119 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLNLRPSLCSSSLK 298
+++ D GK+TL ++L S AG G A +F TR+ C+ +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 299 RKI*Y 313
R + Y
Sbjct: 111 RSLLY 115
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCTPLNLRPSLCSSS 292
N+ I H+DHGK+TLT ++ A+ + D K+E+ R +N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 293 LKR 301
L+R
Sbjct: 107 LRR 109
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 373 DSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTE 483
D PGH DF + D A++V+ T GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 355 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
+ I +ID+PGH DF + D A++VV +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 355 FLINLIDSPGHVDFSSEVTAALRVTDGALVVV 450
+ I +ID+PGH DF + D A++VV
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 355 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
+ I +ID+PGH DF + D A++VV +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 355 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSG 465
+ I +ID+PGH DF + D A++VV +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 352 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQAI 504
GFLI ID+PGH FS+ T + D A++VV+ G+ QT L+ I
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLI 598
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 31.9 bits (69), Expect = 0.43
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +2
Query: 38 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 214
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 215 RFTDTRKDEQDRCTPLNLRPSLCSSSLKRKI*YSSQTLTNV 337
R +QD ++L L + R+ T+T++
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 92 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 217
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 349 KGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGVCVQTETVLRQA 501
KG + +D+PGH F+S + D ++VV GV QT ++ A
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFA 252
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 354
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 140 DRRGRSQTCCGYSASCPSSHG 78
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTS 402
STVSV T T + ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTS 402
STVSV T T + ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 140 DRRGRSQTCCGYSASCPSSHG 78
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 55 GEFHGRRDPWDDGQEAEYPQHVCDR 129
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 55 GEFHGRRDPWDDGQEAEYPQHVCDR 129
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 461 DVRSTTTRAPSVTRSAAVTSEEKSTCPGESIK 366
D +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 351
+T + T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 343 SEKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVERTSGV 468
S G + LID PGH V AA V D A+V+ E V
Sbjct: 68 SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVISESAKKV 109
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 247
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 491 STVSVCTHTPDVRSTTTRAPSVTRSAAVTSEEKST 387
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>U40061-5|AAY43979.1| 312|Caenorhabditis elegans Hypothetical
protein ZK563.7 protein.
Length = 312
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 341 FSHWSGFVMNTKSFSSSSKNIEMAVDLMVCN 249
F HW G V T +F+ + K++EM+ DL + N
Sbjct: 40 FIHWLGGVNITSNFNFNQKSMEMS-DLKIFN 69
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 467 TPDVRSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSHWSGFVMNTKSFSSS 291
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 290 SKN 282
S N
Sbjct: 216 SGN 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,431
Number of Sequences: 27780
Number of extensions: 319543
Number of successful extensions: 1143
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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