Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20822
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    31   0.011
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    31   0.011
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = +2

Query: 8   TVLGVIPYAGVSFFTYETLKHKYTEHFGPPQYALSSVLCGGAAGALAQTASYPLDIVRRR 187
           +V G+I Y    F  Y+T +    +    P   L S         +A   SYP D VRRR
Sbjct: 182 SVQGIIIYRAAYFGFYDTARGMLPDPKKTP--FLISWGIAQVVTTVAGIVSYPFDTVRRR 239

Query: 188 MQTRS--------YPTMLATFRAVYTTEDG 253
           M  +S        Y + L  +  +Y TE G
Sbjct: 240 MMMQSGRAKSEILYKSTLHCWATIYKTEGG 269



 Score = 30.3 bits (65), Expect = 0.018
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 98  QYALSSVLCGGAAGALAQTASYPLDIVRRRM 190
           +Y + ++  GGAAGA +    YPLD  R R+
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRL 143


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = +2

Query: 8   TVLGVIPYAGVSFFTYETLKHKYTEHFGPPQYALSSVLCGGAAGALAQTASYPLDIVRRR 187
           +V G+I Y    F  Y+T +    +    P   L S         +A   SYP D VRRR
Sbjct: 182 SVQGIIIYRAAYFGFYDTARGMLPDPKKTP--FLISWGIAQVVTTVAGIVSYPFDTVRRR 239

Query: 188 MQTRS--------YPTMLATFRAVYTTEDG 253
           M  +S        Y + L  +  +Y TE G
Sbjct: 240 MMMQSGRAKSEILYKSTLHCWATIYKTEGG 269



 Score = 30.3 bits (65), Expect = 0.018
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 98  QYALSSVLCGGAAGALAQTASYPLDIVRRRM 190
           +Y + ++  GGAAGA +    YPLD  R R+
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRL 143


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 220 HLPRRLHDRRWR 255
           HLPR  HD  W+
Sbjct: 509 HLPRIHHDAEWK 520


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 220 HLPRRLHDRRWR 255
           HLPR  HD  W+
Sbjct: 424 HLPRIHHDAEWK 435


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 220 HLPRRLHDRRWR 255
           HLPR  HD  W+
Sbjct: 743 HLPRIHHDAEWK 754


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 604 CYLNPLYLIVAPST 563
           CYLN   L+  P+T
Sbjct: 564 CYLNTFLLLATPTT 577


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 604 CYLNPLYLIVAPST 563
           CYLN   L+  P+T
Sbjct: 654 CYLNTFLLLATPTT 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,798
Number of Sequences: 438
Number of extensions: 3750
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)