Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20821
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    27   0.11 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    27   0.11 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   3.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.5  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 334 LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEE 438
           L  +  D EP HP+R      F  +R  F  NA++
Sbjct: 367 LTLIATDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 334 LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEE 438
           L  +  D EP HP+R      F  +R  F  NA++
Sbjct: 367 LTLIATDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 LTWQGLIVPDNPPYNKGAFRIEI-NFPAEYPFKPPKISFKTKIYHP 244
           + W    V  +P +    F     + P  YP  PP  +     YHP
Sbjct: 133 IAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYTHHYARYHP 178


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 660 HYMYFNCYLWVELII 616
           H  Y  CYLWV ++I
Sbjct: 170 HEFYGFCYLWVLILI 184


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 295 WKPATKTDQVIQALVALVNDPEPE 366
           W+P  KTD    ALV+  +D E +
Sbjct: 150 WEPKNKTDDDDDALVSDSDDREKD 173


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = -2

Query: 703 WWFYFISLSFDIHMTLYVL 647
           ++FY +S++F++H+ L++L
Sbjct: 57  YYFYCVSITFNVHL-LFLL 74



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 703 WWFYFISLSFDIHMTLYVLQLLFM 632
           ++FY++ L F     ++ + LLF+
Sbjct: 259 YYFYYMHLLFCCAFIIFTMHLLFL 282


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 198  HSNPRKLVSKQRFTTLTLMKGSGVPA 275
            H+N    V++  F TLT+  G+  PA
Sbjct: 1567 HNNAGFNVAEYEFATLTVTGGTIAPA 1592


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 256 FINVRVVNLCFETNFRGFEW 197
           F++ R   LC E N   F W
Sbjct: 152 FLSFRCTKLCKEANKTAFLW 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,529
Number of Sequences: 336
Number of extensions: 3460
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)