Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20821
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.8  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 465 PFFTVFFGKFFCILCKFLPIFEKFF 391
           PFFT++  + FC  C    +F   F
Sbjct: 24  PFFTMYLVRAFCRNCIHPTVFSVLF 48


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 465 PFFTVFFGKFFCILCKFLPIFEKFF 391
           PFFT++  + FC  C    +F   F
Sbjct: 472 PFFTMYLVRAFCRNCIHPTVFSVLF 496


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 198  HSNPRKLVSKQRFTTLTLMKGSGVPA 275
            H+N    V++  F TLT+  G+  PA
Sbjct: 1537 HNNAGFAVAEYEFATLTVTGGTIAPA 1562


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 277 IISAENWKPATKTDQVIQALVALVNDPEPEHPLR 378
           I++  N  P   T        A +   EP HP+R
Sbjct: 424 IVTCTNCGPNPCTHTTTNGCTAELRKKEPPHPIR 457


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 277 IISAENWKPATKTDQVIQALVALVNDPEPEHPLR 378
           I++  N  P   T        A +   EP HP+R
Sbjct: 410 IVTCTNCGPNPCTHTTTNGCTAELRKKEPPHPIR 443


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 277 IISAENWKPATKTDQVIQALVALVNDPEPEHPLR 378
           I++  N  P   T        A +   EP HP+R
Sbjct: 444 IVTCTNCGPNPCTHTTTNGCTAELRKKEPPHPIR 477


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 277 IISAENWKPATKTDQVIQALVALVNDPEPEHPLR 378
           I++  N  P   T        A +   EP HP+R
Sbjct: 393 IVTCTNCGPNPCTHTTTNGCTAELRKKEPPHPIR 426


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 110 LTWQGLIVPDNPP 148
           L   G+I+PD+PP
Sbjct: 420 LPGNGVIIPDDPP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,639
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)