Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20820
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    94   2e-20
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    61   2e-10
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    55   1e-08
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.9  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   5.0  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 42/68 (61%), Positives = 49/68 (72%)
 Frame = +3

Query: 51  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 230
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 231 DEGVAKMS 254
           DEGV KMS
Sbjct: 61  DEGVPKMS 68



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +2

Query: 236 GCGKDVLGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 370
           G  K  LGE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 63  GVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/66 (46%), Positives = 41/66 (62%)
 Frame = +3

Query: 54  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 233
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 234 EGVAKM 251
            GVA M
Sbjct: 316 VGVAGM 321



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +2

Query: 257 GERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 370
           GER K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 325 GER-KITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/65 (46%), Positives = 37/65 (56%)
 Frame = +3

Query: 57  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 236
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 237 GVAKM 251
           G+  M
Sbjct: 318 GIVGM 322



 Score = 32.3 bits (70), Expect = 0.077
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +2

Query: 242 GKDVLGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 364
           G  V GER  +      AYG +  PG IP NS L+FDV+LL
Sbjct: 321 GMQVGGERT-IHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 463 FYHILSLKSLYQHCVL*WKYIYIYAIRKNFIL*VNKFM-----VRLINEILKIIDSILSD 627
           F    SLKSL   C L   +   YAI+ +F    N F+      RL+N+  +II+  L D
Sbjct: 341 FLSFNSLKSLCSKCYLRTSFPEKYAIKVDFEFLKNVFINTYDRTRLVNDYDEIINFTLKD 400


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 635 TFLKSILSL*FHHNTYLHLRDNCIYIY 715
           TFLK I     H   Y + +DNCIY+Y
Sbjct: 255 TFLKGISRRSGHQMVY-NPKDNCIYLY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,251
Number of Sequences: 5004
Number of extensions: 64198
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)