Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20819
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    48   1e-06
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    28   1.1  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    28   1.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   4.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   5.9  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   7.8  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   7.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.8  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 306 EPWYWWSKFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKG 482
           E W  W        +  R+ V LEL  A  P  E+V RW  EP++ I +    F  N  G
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPNG 233

Query: 483 YPVLSR 500
           YPVL R
Sbjct: 234 YPVLGR 239


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
 Frame = +1

Query: 10   TSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGRESNN 174
            ++RI A  SP   ++  + +     + +L+     EEL    GL +  I    +GR  ++
Sbjct: 2043 SARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGRTVHS 2102

Query: 175  LARILQTYYETSHHPSLIWACVPMLCREHIE-NALKMMKKRKL 300
            LAR+L  ++   H  S     +P   ++ I  N L  ++ R+L
Sbjct: 2103 LARLLAFWHVELHLVSPEQLALPDDVKDDIRANGLNFIEHREL 2145


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 506 PQLVVSMVEHEAQVIVSGARRSNIEFFVQYLHRVWRRRPNPANDPMLS 649
           P LV    +  +QV V     S  E + + LHRV++ R N  NDP  S
Sbjct: 377 PSLVCDFTDGVSQVFVP-TPPSIEEAYHKLLHRVFKSRLNIVNDPASS 423


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 79  RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 246
           RH D +N+ L +  G+G+P I    +  I+  E  NL +++   +  S+  S+     P+
Sbjct: 99  RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156

Query: 247 L 249
           +
Sbjct: 157 I 157


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 457 DVGTIIAFTGSPSHLFTTSCDGRSADNSKTTPTRLSQSRRSWNLDHQYQ 311
           D+  I       + LF + C G + D+S  + T+LSQS  + +L H Y+
Sbjct: 268 DIELITCKFSKLNSLFLSKCIGLT-DSSLLSLTKLSQSLTTLHLGHCYE 315


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 542 QVIVSGARRSNIEFFVQYL 598
           +VI+S  + SNIE F++YL
Sbjct: 395 EVIISNLKASNIEAFLEYL 413


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 420 LGEPVKAIIVPTSIFHNNKKGYP 488
           LG P K+  VPTS+  N  + +P
Sbjct: 318 LGRPTKSPSVPTSVGSNKSRKFP 340


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 589 YEEFNVGSSSTTNYNLCFMFYHANYK 512
           YE+ +VG S+T NY L  + + A+YK
Sbjct: 59  YEDVSVGRSNTCNYQL--LQFTASYK 82


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 262 YVLYIA*VHMPILETDGGSFHNKFGEFWLNCCSLSRVL 149
           + +YI  V +PIL   G SFH   G  W      SR+L
Sbjct: 851 FEIYI--VKVPILSLRGVSFHRISGNSWQYKTLASRIL 886


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 670 VFPSSCIAEHRIIC 629
           +FPSS I+EHR +C
Sbjct: 586 IFPSSNISEHRAMC 599


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 7   WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 141
           WT     K   +++VDS   +  +   +E    +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,507
Number of Sequences: 5004
Number of extensions: 68827
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)