Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20819
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 32 0.37
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 31 1.1
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432 31 1.1
10_08_0406 - 17688069-17690643,17691065-17691132 30 1.5
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 2.6
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 2.6
11_06_0647 + 25870470-25870744,25870765-25871533 28 6.0
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 8.0
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 378 LSADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSRAHHNL 515
+ + LPS + RW GEP F N +GYP LS+ H L
Sbjct: 179 IRSTLPSMNSLGRWFGEPA---------FLTNARGYPCLSKRHQKL 215
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE--LSYCRGLGVPAIMISIH 156
DW SR++A Y+ +D P+AT D + E + R LG+ +++ H
Sbjct: 203 DWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTH 255
>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
Length = 314
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 52 DSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 231
D PS + + + S+ RG+G A+ IHG + LA + + P +++
Sbjct: 176 DDPSVVITTYEGQHCHHTASFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235
Query: 232 ACVPMLCREHIENAL 276
+P L E A+
Sbjct: 236 G-LPRLHPPSSETAV 249
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 148 SIHGRESNNLARILQTYYETSHHPSLIWAC 237
++H S N+ R++ TY+ +H P L W C
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLC 583
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 395
W +PWYWWS L W K+ L +A++P
Sbjct: 285 WFKPWYWWSWPILPLGLSWHKQRWDDLGYAAEMP 318
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 395
W +PWYWWS L W ++ L S++LP
Sbjct: 244 WFKPWYWWSWPVLPLGLSWHEQRRENLGYSSELP 277
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 267 ECTEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRW 419
E T+DD+EE E ++HE WD+R L +S LP E + W
Sbjct: 240 ENTQDDKEESERQEEEKTTEEWHEWYKWDERSDRSL-VSIALPLIEAGEVW 289
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGEPETKQDILF 475
LH RC T S L +RA L ++ + ++ SC P +Q +++
Sbjct: 729 LHIRC---TNGSKLAVRADLGLSVGAFKAIVAESCDVPAPQQRLIY 771
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,212
Number of Sequences: 37544
Number of extensions: 438715
Number of successful extensions: 1130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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