Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20819
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 30 2.0
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 29 2.7
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59) 29 4.7
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 28 6.2
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 28 6.2
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 28 6.2
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 28 6.2
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 28 6.2
SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9) 28 8.1
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8) 28 8.1
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073) 28 8.1
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +2
Query: 575 IEFFVQYLHRVWRRRPNPANDPMLSYARGWEDYLQTPL 688
++F+ QYL +++ + P DP+ +A+G+EDYLQ PL
Sbjct: 187 VQFYYQYLEHLYQTQA-PL-DPLGRFAKGYEDYLQCPL 222
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 94 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLCRE 258
L +E++Y LG+P++M+ + NLA + SH L W VPM C E
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPMRCSE 171
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGEPE 496
LHT CR+C + S+++ T++C C + S E E
Sbjct: 32 LHTYCRHCLE-SLVEHSKECTVSCPQCREKIEISVDEVE 69
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 600 CRYCTKNSMLDLRAPLTITCASCSTMLTTSCGEPETKQDILFC 472
C +C + DL +C SC + ++T G I FC
Sbjct: 712 CDHCPLGTYQDLEKHTNTSCVSCPSKMSTKSGATNKSACISFC 754
>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
Length = 437
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 273 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLEL 380
T D+E++ + WWSKF+ + ++ G L+L
Sbjct: 116 TRRDKEKETMEQYVDWWSKFYASIGQAEKAGAYLDL 151
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGE 502
LHT CR+C + S+++ T++C C + S E
Sbjct: 33 LHTYCRHCLE-SLVEHSKECTVSCPQCREKIEISVEE 68
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGE 502
LHT CR+C + S+++ T++C C + S E
Sbjct: 33 LHTYCRHCLE-SLVEHSQERTVSCPQCREKIVISVEE 68
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGE 502
LHT CR+C + S+++ T++C C + S E
Sbjct: 42 LHTYCRHCLE-SLVEHSKECTVSCPQCREKIEISVEE 77
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 153 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 251
T+ +QQ S SP+ + PPS S G T AM
Sbjct: 114 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 146
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 153 TREREQQFSQNSPNLL*NEPPSVSNMGMCTYAM 251
T+ +QQ S SP+ + PPS S G T AM
Sbjct: 192 TKSVKQQSSMFSPSAMLCSPPSTSTQGQTTLAM 224
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 612 LHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGE 502
LHT CR+C + S+++ T++C C + S E
Sbjct: 33 LHTYCRHCLE-SLVEHSQERTVSCPQCREKIVISVEE 68
>SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)
Length = 104
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 283 MKKRKLGMSPGTGGPNSMSALIGINVLVLFWSCLQIFHHR 402
+ +K+ + P + S + +I L SC+Q+ HHR
Sbjct: 52 LSAQKVALKPASNSIPSNTIIINFVFAALHRSCMQLIHHR 91
>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
Length = 623
Score = 27.9 bits (59), Expect = 8.1
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Frame = -2
Query: 618 LLLHTRCRYCTKNSMLDLRAPLTITCASCSTMLTTSCGEPETKQDILFCYYEILMLVR*S 439
+LLH YCT + L P+ + C+ TS P Q +L Y +
Sbjct: 347 VLLHQY--YCTSITAPVLLQPVLLHQYYCNQYYCTSITAPVLLQPVLLYQYYCTSITVPV 404
Query: 438 LLLVHQAISLLLPVMEDLQTTPKQHQHVYPNQ-GAHGIWTTSTRAHSKLS--LLHHLQCI 268
LL + S+ +PV+ T P Q V Q I TS A L LLH C
Sbjct: 405 LLHQYYCTSITVPVLLHHITAPVLLQPVLLYQYYCTSIIATSITAPVLLQPVLLHQYYCN 464
Query: 267 LY 262
Y
Sbjct: 465 QY 466
>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
Length = 498
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 300 WNEPWYWWSKFHERLDWDKRV 362
WN+PWY W K + D DK V
Sbjct: 26 WNKPWYQWDK--KENDADKTV 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,976,730
Number of Sequences: 59808
Number of extensions: 509624
Number of successful extensions: 1190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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