Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20819
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    68   7e-12
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    68   7e-12
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    30   1.7  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   2.2  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    29   2.2  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    29   2.2  
At4g13110.1 68417.m02043 BSD domain-containing protein contains ...    27   8.8  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    27   8.8  
At2g26440.1 68415.m03172 pectinesterase family protein contains ...    27   8.8  
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ...    27   8.8  
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit...    27   8.8  

>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 28/78 (35%), Positives = 45/78 (57%)
 Frame = +3

Query: 282 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 461
           D+  +  N+ W  W+ F    + D ++ V L++ + LPS+  + RW+GE V+A I+ T  
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228

Query: 462 FHNNKKGYPVLSRAHHNL 515
           F  N +GYP LS+ H  L
Sbjct: 229 FLTNARGYPCLSKRHQKL 246


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 28/78 (35%), Positives = 45/78 (57%)
 Frame = +3

Query: 282 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 461
           D+  +  N+ W  W+ F    + D ++ V L++ + LPS+  + RW+GE V+A I+ T  
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228

Query: 462 FHNNKKGYPVLSRAHHNL 515
           F  N +GYP LS+ H  L
Sbjct: 229 FLTNARGYPCLSKRHQKL 246


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 4   DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELS--YCRGLGVPAIMISIH 156
           DW SRIVA    Y+ +D P+ T      D + E  +    R L +P  + + H
Sbjct: 206 DWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTH 258


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 61  SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 198
           +A++ +RHE  LN  LS        A M S H R S    R++++Y
Sbjct: 78  AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 300 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 395
           W +PWYWWS         W ++    +  SA++P
Sbjct: 183 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 216


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 300 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 395
           W +PWYWWS         W ++    +  SA++P
Sbjct: 291 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 324


>At4g13110.1 68417.m02043 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 336 ERLDWDKRVGVVLELSADL 392
           ERLDW +R GV +E   DL
Sbjct: 284 ERLDWRRRAGVAVEEEEDL 302


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
           identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
           similar to CREB-binding protein GB:S39162 from [Homo
           sapiens]
          Length = 1670

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 436 FTGSPSHLFTTSCD-GRSADNSKTTPTRLSQSRRSWNLDHQYQGSFQA 296
           ++G    L  T  D G  +   K  PT  S     +NLDHQ  G F++
Sbjct: 212 YSGDGGKLLATGSDFGNPSQLQKQRPTG-SNDLMGYNLDHQLGGGFRS 258


>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 256 EHIENALKMMKKRKLGMSPGTGGPNSMSALIGI 354
           +HI N+L  + K++   +P TGG      L+G+
Sbjct: 177 KHISNSLSALPKQRRTTNPKTGGNTKNRRLLGL 209


>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 573

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 324 SKFHERLDWDKRVGVVLELSADLPSQEVVK 413
           S   ER  WD   G VL L+ +L  +E+V+
Sbjct: 42  SVLRERYHWDSLGGTVLHLATELGHKEIVE 71


>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
          Length = 183

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 267 ECTEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVL 374
           E +E+DE+E+A      W +KF E+LD +    ++L
Sbjct: 90  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIIL 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,131
Number of Sequences: 28952
Number of extensions: 355124
Number of successful extensions: 972
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)